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JDP2 (Jun dimerization protein 2)

Identity

Alias_symbol (synonym)JUNDM2
Other alias
HGNC (Hugo) JDP2
LocusID (NCBI) 122953
Atlas_Id 45799
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 75427806 and ends at 75472701 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
JDP2 (14q24.3) / VRTN (14q24.3)JDP2 14q24.3 / VRTN 14q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)JDP2   17546
Cards
Entrez_Gene (NCBI)JDP2  122953  Jun dimerization protein 2
AliasesJUNDM2
GeneCards (Weizmann)JDP2
Ensembl hg19 (Hinxton)ENSG00000140044 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140044 [Gene_View]  chr14:75427806-75472701 [Contig_View]  JDP2 [Vega]
ICGC DataPortalENSG00000140044
TCGA cBioPortalJDP2
AceView (NCBI)JDP2
Genatlas (Paris)JDP2
WikiGenes122953
SOURCE (Princeton)JDP2
Genetics Home Reference (NIH)JDP2
Genomic and cartography
GoldenPath hg38 (UCSC)JDP2  -     chr14:75427806-75472701 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)JDP2  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblJDP2 - 14q24.3 [CytoView hg19]  JDP2 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIJDP2 [Mapview hg19]  JDP2 [Mapview hg38]
OMIM608657   
Gene and transcription
Genbank (Entrez)AB077880 AI916777 BC051303 BC068196 BE389064
RefSeq transcript (Entrez)NM_001135047 NM_001135048 NM_001135049 NM_130469
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)JDP2
Cluster EST : UnigeneHs.196482 [ NCBI ]
CGAP (NCI)Hs.196482
Alternative Splicing GalleryENSG00000140044
Gene ExpressionJDP2 [ NCBI-GEO ]   JDP2 [ EBI - ARRAY_EXPRESS ]   JDP2 [ SEEK ]   JDP2 [ MEM ]
Gene Expression Viewer (FireBrowse)JDP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)122953
GTEX Portal (Tissue expression)JDP2
Human Protein AtlasENSG00000140044-JDP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WYK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WYK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WYK2
Splice isoforms : SwissVarQ8WYK2
PhosPhoSitePlusQ8WYK2
Domaine pattern : Prosite (Expaxy)BZIP (PS50217)    BZIP_BASIC (PS00036)   
Domains : Interpro (EBI)AP-1    bZIP    JDP2   
Domain families : Pfam (Sanger)bZIP_1 (PF00170)   
Domain families : Pfam (NCBI)pfam00170   
Domain families : Smart (EMBL)BRLZ (SM00338)  
Conserved Domain (NCBI)JDP2
DMDM Disease mutations122953
Blocks (Seattle)JDP2
SuperfamilyQ8WYK2
Human Protein Atlas [tissue]ENSG00000140044-JDP2 [tissue]
Peptide AtlasQ8WYK2
HPRD16360
IPIIPI00913993   IPI00103731   
Protein Interaction databases
DIP (DOE-UCLA)Q8WYK2
IntAct (EBI)Q8WYK2
FunCoupENSG00000140044
BioGRIDJDP2
STRING (EMBL)JDP2
ZODIACJDP2
Ontologies - Pathways
QuickGOQ8WYK2
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  chromatin binding  protein binding  nucleus  transcription, DNA-templated  positive regulation of histone deacetylation  negative regulation of fat cell differentiation  protein heterodimerization activity  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  chromatin binding  protein binding  nucleus  transcription, DNA-templated  positive regulation of histone deacetylation  negative regulation of fat cell differentiation  protein heterodimerization activity  
NDEx NetworkJDP2
Atlas of Cancer Signalling NetworkJDP2
Wikipedia pathwaysJDP2
Orthology - Evolution
OrthoDB122953
GeneTree (enSembl)ENSG00000140044
Phylogenetic Trees/Animal Genes : TreeFamJDP2
HOVERGENQ8WYK2
HOGENOMQ8WYK2
Homologs : HomoloGeneJDP2
Homology/Alignments : Family Browser (UCSC)JDP2
Gene fusions - Rearrangements
Fusion : MitelmanJDP2/VRTN [14q24.3/14q24.3]  
Fusion: TCGA_MDACCJDP2 14q24.3 VRTN 14q24.3 BRCA
Tumor Fusion PortalJDP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerJDP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)JDP2
dbVarJDP2
ClinVarJDP2
1000_GenomesJDP2 
Exome Variant ServerJDP2
ExAC (Exome Aggregation Consortium)ENSG00000140044
GNOMAD BrowserENSG00000140044
Genetic variants : HAPMAP122953
Genomic Variants (DGV)JDP2 [DGVbeta]
DECIPHERJDP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisJDP2 
Mutations
ICGC Data PortalJDP2 
TCGA Data PortalJDP2 
Broad Tumor PortalJDP2
OASIS PortalJDP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICJDP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDJDP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch JDP2
DgiDB (Drug Gene Interaction Database)JDP2
DoCM (Curated mutations)JDP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)JDP2 (select a term)
intoGenJDP2
Cancer3DJDP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608657   
Orphanet
DisGeNETJDP2
MedgenJDP2
Genetic Testing Registry JDP2
NextProtQ8WYK2 [Medical]
TSGene122953
GENETestsJDP2
Target ValidationJDP2
Huge Navigator JDP2 [HugePedia]
snp3D : Map Gene to Disease122953
BioCentury BCIQJDP2
ClinGenJDP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD122953
Chemical/Pharm GKB GenePA162392499
Clinical trialJDP2
Miscellaneous
canSAR (ICR)JDP2 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineJDP2
EVEXJDP2
GoPubMedJDP2
iHOPJDP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:18:23 CET 2017

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