Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KCNQ3 (potassium channel, voltage gated KQT-like subfamily Q, member 3)

Identity

Other namesBFNC2
EBN2
KV7.3
HGNC (Hugo) KCNQ3
LocusID (NCBI) 3786
Atlas_Id 41052
Location 8q24.22
Location_base_pair Starts at 133133105 and ends at 133459509 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KCNQ3   6297
Cards
Entrez_Gene (NCBI)KCNQ3  3786  potassium channel, voltage gated KQT-like subfamily Q, member 3
GeneCards (Weizmann)KCNQ3
Ensembl hg19 (Hinxton)ENSG00000184156 [Gene_View]  chr8:133133105-133459509 [Contig_View]  KCNQ3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000184156 [Gene_View]  chr8:133133105-133459509 [Contig_View]  KCNQ3 [Vega]
ICGC DataPortalENSG00000184156
TCGA cBioPortalKCNQ3
AceView (NCBI)KCNQ3
Genatlas (Paris)KCNQ3
WikiGenes3786
SOURCE (Princeton)KCNQ3
Genomic and cartography
GoldenPath hg19 (UCSC)KCNQ3  -     chr8:133133105-133459509 -  8q24.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KCNQ3  -     8q24.22   [Description]    (hg38-Dec_2013)
EnsemblKCNQ3 - 8q24.22 [CytoView hg19]  KCNQ3 - 8q24.22 [CytoView hg38]
Mapping of homologs : NCBIKCNQ3 [Mapview hg19]  KCNQ3 [Mapview hg38]
OMIM121201   602232   
Gene and transcription
Genbank (Entrez)AB208890 AF033347 AK094705 AK095711 AK296293
RefSeq transcript (Entrez)NM_001204824 NM_004519
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_008854 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)KCNQ3
Cluster EST : UnigeneHs.374023 [ NCBI ]
CGAP (NCI)Hs.374023
Alternative Splicing : Fast-db (Paris)GSHG0029870
Alternative Splicing GalleryENSG00000184156
Gene ExpressionKCNQ3 [ NCBI-GEO ]     KCNQ3 [ SEEK ]   KCNQ3 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)3786
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43525 (Uniprot)
NextProtO43525  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43525
Splice isoforms : SwissVarO43525 (Swissvar)
PhosPhoSitePlusO43525
Domains : Interpro (EBI)Ankyrin-G_BS    Ion_trans_dom    K_chnl    K_chnl_volt-dep_KCNQ    K_chnl_volt-dep_KCNQ3    K_chnl_volt-dep_KCNQ_C    VG_K_chnl   
Domain families : Pfam (Sanger)Ion_trans (PF00520)    KCNQ_channel (PF03520)    KCNQC3-Ank-G_bd (PF11956)   
Domain families : Pfam (NCBI)pfam00520    pfam03520    pfam11956   
DMDM Disease mutations3786
Blocks (Seattle)KCNQ3
Human Protein AtlasENSG00000184156
Peptide AtlasO43525
HPRD09077
IPIIPI00012857   IPI00556205   IPI00976856   IPI00979950   
Protein Interaction databases
DIP (DOE-UCLA)O43525
IntAct (EBI)O43525
FunCoupENSG00000184156
BioGRIDKCNQ3
IntegromeDBKCNQ3
STRING (EMBL)KCNQ3
ZODIACKCNQ3
Ontologies - Pathways
QuickGOO43525
Ontology : AmiGOvoltage-gated potassium channel activity  delayed rectifier potassium channel activity  potassium channel activity  calmodulin binding  plasma membrane  plasma membrane  potassium ion transport  synaptic transmission  axon guidance  voltage-gated potassium channel complex  cell surface  oligodendrocyte development  protein kinase binding  dendrite  ubiquitin protein ligase binding  node of Ranvier  regulation of ion transmembrane transport  neuronal cell body  axon initial segment  ion channel binding  membrane raft  membrane hyperpolarization  ganglion development  cellular response to ammonium ion  potassium ion transmembrane transport  
Ontology : EGO-EBIvoltage-gated potassium channel activity  delayed rectifier potassium channel activity  potassium channel activity  calmodulin binding  plasma membrane  plasma membrane  potassium ion transport  synaptic transmission  axon guidance  voltage-gated potassium channel complex  cell surface  oligodendrocyte development  protein kinase binding  dendrite  ubiquitin protein ligase binding  node of Ranvier  regulation of ion transmembrane transport  neuronal cell body  axon initial segment  ion channel binding  membrane raft  membrane hyperpolarization  ganglion development  cellular response to ammonium ion  potassium ion transmembrane transport  
Pathways : BIOCARTAIon Channels and Their Functional Role in Vascular Endothelium [Genes]   
Pathways : KEGGCholinergic synapse   
Protein Interaction DatabaseKCNQ3
Atlas of Cancer Signalling NetworkKCNQ3
Wikipedia pathwaysKCNQ3
Orthology - Evolution
OrthoDB3786
GeneTree (enSembl)ENSG00000184156
Phylogenetic Trees/Animal Genes : TreeFamKCNQ3
Homologs : HomoloGeneKCNQ3
Homology/Alignments : Family Browser (UCSC)KCNQ3
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKCNQ3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KCNQ3
dbVarKCNQ3
ClinVarKCNQ3
1000_GenomesKCNQ3 
Exome Variant ServerKCNQ3
Exome Aggregation Consortium (ExAC)ENSG00000184156
SNP (GeneSNP Utah)KCNQ3
SNP : HGBaseKCNQ3
Genetic variants : HAPMAPKCNQ3
Genomic Variants (DGV)KCNQ3 [DGVbeta]
Mutations
ICGC Data PortalKCNQ3 
TCGA Data PortalKCNQ3 
Tumor PortalKCNQ3
TCGA Copy Number PortalKCNQ3
Somatic Mutations in Cancer : COSMICKCNQ3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch KCNQ3
DgiDB (Drug Gene Interaction Database)KCNQ3
DoCM (Curated mutations)KCNQ3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KCNQ3 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)8:133133105-133459509
CONAN: Copy Number AnalysisKCNQ3 
Mutations and Diseases : HGMDKCNQ3
OMIM121201    602232   
MedgenKCNQ3
NextProtO43525 [Medical]
TSGene3786
GENETestsKCNQ3
Huge Navigator KCNQ3 [HugePedia]  KCNQ3 [HugeCancerGEM]
snp3D : Map Gene to Disease3786
BioCentury BCIQKCNQ3
General knowledge
Chemical/Protein Interactions : CTD3786
Chemical/Pharm GKB GenePA30075
Clinical trialKCNQ3
Other databases
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKCNQ3
GoPubMedKCNQ3
iHOPKCNQ3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:52:15 CET 2016

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