Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KDM4B (lysine demethylase 4B)

Identity

Alias (NCBI)JMJD2B
MRD65
TDRD14B
HGNC (Hugo) KDM4B
HGNC Alias symbKIAA0876
TDRD14B
HGNC Alias nametudor domain containing 14B
HGNC Previous nameJMJD2B
HGNC Previous namejumonji domain containing 2B
 lysine (K)-specific demethylase 4B
LocusID (NCBI) 23030
Atlas_Id 47437
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4969113 and ends at 5153597 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHAF1A (19p13.3) / KDM4B (19p13.3)DYRK1A (21q22.13) / KDM4B (19p13.3)KDM4B (19p13.3) / AC011498.1 ()
KDM4B (19p13.3) / AKAP8L (19p13.12)KDM4B (19p13.3) / C19orf44 (19p13.11)KDM4B (19p13.3) / CHAF1A (19p13.3)
KDM4B (19p13.3) / FST (5q11.2)KDM4B (19p13.3) / GTF2F1 (19p13.3)KDM4B (19p13.3) / HP1BP3 (1p36.12)
KDM4B (19p13.3) / KDM4B (19p13.3)KDM4B (19p13.3) / MPND (19p13.3)KDM4B (19p13.3) / SLC25A42 (19p13.11)
KDM4B (19p13.3) / UHRF1 (19p13.3)S100A6 (1q21.3) / KDM4B (19p13.3)STK11 (19p13.3) / KDM4B (19p13.3)
STK24 (13q32.2) / KDM4B (19p13.3)UBR4 (1p36.13) / KDM4B (19p13.3)DYRK1A 21q22.13 / KDM4B 19p13.3
KDM4B 19p13.3 AC011498.1KDM4B 19p13.3 / AKAP8L 19p13.12KDM4B 19p13.3 / C19orf44 19p13.11
KDM4B 19p13.3 / CHAF1A 19p13.3KDM4B 19p13.3 / MPND 19p13.3KDM4B 19p13.3 / SLC25A42 19p13.11
KDM4B 19p13.3 / UHRF1 19p13.3STK11 19p13.3 / KDM4B 19p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(10;19)(p11;p13) KDM4B/CUL2


External links

 

Nomenclature
HGNC (Hugo)KDM4B   29136
Cards
Entrez_Gene (NCBI)KDM4B    lysine demethylase 4B
AliasesJMJD2B; MRD65; TDRD14B
GeneCards (Weizmann)KDM4B
Ensembl hg19 (Hinxton)ENSG00000127663 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127663 [Gene_View]  ENSG00000127663 [Sequence]  chr19:4969113-5153597 [Contig_View]  KDM4B [Vega]
ICGC DataPortalENSG00000127663
TCGA cBioPortalKDM4B
AceView (NCBI)KDM4B
Genatlas (Paris)KDM4B
SOURCE (Princeton)KDM4B
Genetics Home Reference (NIH)KDM4B
Genomic and cartography
GoldenPath hg38 (UCSC)KDM4B  -     chr19:4969113-5153597 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KDM4B  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathKDM4B - 19p13.3 [CytoView hg19]  KDM4B - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000127663
Genome Data Viewer NCBIKDM4B [Mapview hg19]  
OMIM609765   619320   
Gene and transcription
Genbank (Entrez)AB020683 AF052144 AK026040 AK126854 AL133622
RefSeq transcript (Entrez)NM_001370093 NM_001370094 NM_015015
Consensus coding sequences : CCDS (NCBI)KDM4B
Gene ExpressionKDM4B [ NCBI-GEO ]   KDM4B [ EBI - ARRAY_EXPRESS ]   KDM4B [ SEEK ]   KDM4B [ MEM ]
Gene Expression Viewer (FireBrowse)KDM4B [ Firebrowse - Broad ]
GenevisibleExpression of KDM4B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23030
GTEX Portal (Tissue expression)KDM4B
Human Protein AtlasENSG00000127663-KDM4B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94953   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94953  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94953
PhosPhoSitePlusO94953
Domaine pattern : Prosite (Expaxy)EPHD (PS51805)    JMJC (PS51184)    JMJN (PS51183)   
Domains : Interpro (EBI)EPHD    JmjC_dom    JmjN    KDM4_Tudor_2    Tudor    Znf_FYVE_PHD    Znf_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)JmjC (PF02373)    JmjN (PF02375)    Tudor_2 (PF18104)   
Domain families : Pfam (NCBI)pfam02373    pfam02375    pfam18104   
Domain families : Smart (EMBL)JmjC (SM00558)  JmjN (SM00545)  PHD (SM00249)  TUDOR (SM00333)  
Conserved Domain (NCBI)KDM4B
PDB (RSDB)4LXL    4UC4   
PDB Europe4LXL    4UC4   
PDB (PDBSum)4LXL    4UC4   
PDB (IMB)4LXL    4UC4   
Structural Biology KnowledgeBase4LXL    4UC4   
SCOP (Structural Classification of Proteins)4LXL    4UC4   
CATH (Classification of proteins structures)4LXL    4UC4   
SuperfamilyO94953
AlphaFold pdb e-kbO94953   
Human Protein Atlas [tissue]ENSG00000127663-KDM4B [tissue]
HPRD11056
Protein Interaction databases
DIP (DOE-UCLA)O94953
IntAct (EBI)O94953
BioGRIDKDM4B
STRING (EMBL)KDM4B
ZODIACKDM4B
Ontologies - Pathways
QuickGOO94953
Ontology : AmiGOnucleus  nucleoplasm  double-strand break repair  chromatin remodeling  histone demethylase activity  histone demethylase activity (H3-K9 specific)  histone demethylase activity (H3-K9 specific)  histone demethylase activity (H3-K9 specific)  histone H3-K9 demethylation  histone H3-K9 demethylation  metal ion binding  histone demethylase activity (H3-K36 specific)  histone H3-K36 demethylation  
Ontology : EGO-EBInucleus  nucleoplasm  double-strand break repair  chromatin remodeling  histone demethylase activity  histone demethylase activity (H3-K9 specific)  histone demethylase activity (H3-K9 specific)  histone demethylase activity (H3-K9 specific)  histone H3-K9 demethylation  histone H3-K9 demethylation  metal ion binding  histone demethylase activity (H3-K36 specific)  histone H3-K36 demethylation  
NDEx NetworkKDM4B
Atlas of Cancer Signalling NetworkKDM4B
Wikipedia pathwaysKDM4B
Orthology - Evolution
OrthoDB23030
GeneTree (enSembl)ENSG00000127663
Phylogenetic Trees/Animal Genes : TreeFamKDM4B
Homologs : HomoloGeneKDM4B
Homology/Alignments : Family Browser (UCSC)KDM4B
Gene fusions - Rearrangements
Fusion : MitelmanDYRK1A/KDM4B [21q22.13/19p13.3]  
Fusion : MitelmanKDM4B/AKAP8L [19p13.3/19p13.12]  
Fusion : MitelmanKDM4B/C19orf44 [19p13.3/19p13.11]  
Fusion : MitelmanKDM4B/CHAF1A [19p13.3/19p13.3]  
Fusion : MitelmanKDM4B/MPND [19p13.3/19p13.3]  
Fusion : MitelmanKDM4B/SLC25A42 [19p13.3/19p13.11]  
Fusion : MitelmanKDM4B/UHRF1 [19p13.3/19p13.3]  
Fusion : MitelmanSTK11/KDM4B [19p13.3/19p13.3]  
Fusion : MitelmanUBR4/KDM4B [1p36.13/19p13.3]  
Fusion Cancer (Beijing)S100A6 [1q21.3]  -  KDM4B [19p13.3]  [FUSC003176]
Fusion : QuiverKDM4B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKDM4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KDM4B
dbVarKDM4B
ClinVarKDM4B
MonarchKDM4B
1000_GenomesKDM4B 
Exome Variant ServerKDM4B
GNOMAD BrowserENSG00000127663
Varsome BrowserKDM4B
ACMGKDM4B variants
VarityO94953
Genomic Variants (DGV)KDM4B [DGVbeta]
DECIPHERKDM4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKDM4B 
Mutations
ICGC Data PortalKDM4B 
TCGA Data PortalKDM4B 
Broad Tumor PortalKDM4B
OASIS PortalKDM4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKDM4B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKDM4B
Mutations and Diseases : HGMDKDM4B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaKDM4B
DgiDB (Drug Gene Interaction Database)KDM4B
DoCM (Curated mutations)KDM4B
CIViC (Clinical Interpretations of Variants in Cancer)KDM4B
Cancer3DKDM4B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609765    619320   
Orphanet
DisGeNETKDM4B
MedgenKDM4B
Genetic Testing Registry KDM4B
NextProtO94953 [Medical]
GENETestsKDM4B
Target ValidationKDM4B
Huge Navigator KDM4B [HugePedia]
ClinGenKDM4B
Clinical trials, drugs, therapy
MyCancerGenomeKDM4B
Protein Interactions : CTDKDM4B
Pharm GKB GenePA164721452
PharosO94953
Clinical trialKDM4B
Miscellaneous
canSAR (ICR)KDM4B
HarmonizomeKDM4B
DataMed IndexKDM4B
Probes
Litterature
PubMed80 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXKDM4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:14:51 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.