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KIF16B (kinesin family member 16B)

Identity

Alias_namesC20orf23
chromosome 20 open reading frame 23
Alias_symbol (synonym)FLJ20135
dJ971B4.1
SNX23
Other aliasKISC20ORF
HGNC (Hugo) KIF16B
LocusID (NCBI) 55614
Atlas_Id 64913
Location 20p12.1  [Link to chromosome band 20p12]
Location_base_pair Starts at 16252749 and ends at 16554079 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KIF16B (20p12.1) / ABHD2 (15q26.1)KIF16B (20p12.1) / HIPK3 (11p13)KIF16B (20p12.1) / RRBP1 (20p12.1)
MACROD2 (20p12.1) / KIF16B (20p12.1)KIF16B HIPK3KIF16B RRBP1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KIF16B   15869
Cards
Entrez_Gene (NCBI)KIF16B  55614  kinesin family member 16B
AliasesC20orf23; KISC20ORF; SNX23
GeneCards (Weizmann)KIF16B
Ensembl hg19 (Hinxton)ENSG00000089177 [Gene_View]  chr20:16252749-16554079 [Contig_View]  KIF16B [Vega]
Ensembl hg38 (Hinxton)ENSG00000089177 [Gene_View]  chr20:16252749-16554079 [Contig_View]  KIF16B [Vega]
ICGC DataPortalENSG00000089177
TCGA cBioPortalKIF16B
AceView (NCBI)KIF16B
Genatlas (Paris)KIF16B
WikiGenes55614
SOURCE (Princeton)KIF16B
Genetics Home Reference (NIH)KIF16B
Genomic and cartography
GoldenPath hg19 (UCSC)KIF16B  -     chr20:16252749-16554079 -  20p12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KIF16B  -     20p12.1   [Description]    (hg38-Dec_2013)
EnsemblKIF16B - 20p12.1 [CytoView hg19]  KIF16B - 20p12.1 [CytoView hg38]
Mapping of homologs : NCBIKIF16B [Mapview hg19]  KIF16B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB046810 AK000142 AK026698 AK095322 AK307399
RefSeq transcript (Entrez)NM_001199865 NM_001199866 NM_024704
RefSeq genomic (Entrez)NC_000020 NC_018931 NG_028043 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)KIF16B
Cluster EST : UnigeneHs.101774 [ NCBI ]
CGAP (NCI)Hs.101774
Alternative Splicing GalleryENSG00000089177
Gene ExpressionKIF16B [ NCBI-GEO ]   KIF16B [ EBI - ARRAY_EXPRESS ]   KIF16B [ SEEK ]   KIF16B [ MEM ]
Gene Expression Viewer (FireBrowse)KIF16B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55614
GTEX Portal (Tissue expression)KIF16B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96L93   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96L93  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96L93
Splice isoforms : SwissVarQ96L93
PhosPhoSitePlusQ96L93
Domaine pattern : Prosite (Expaxy)KINESIN_MOTOR_1 (PS00411)    KINESIN_MOTOR_2 (PS50067)    PX (PS50195)   
Domains : Interpro (EBI)FHA_dom    Kinesin-like_fam    Kinesin_motor_CS    Kinesin_motor_dom    P-loop_NTPase    Phox    SMAD_FHA_domain   
Domain families : Pfam (Sanger)FHA (PF00498)    Kinesin (PF00225)    PX (PF00787)   
Domain families : Pfam (NCBI)pfam00498    pfam00225    pfam00787   
Domain families : Smart (EMBL)FHA (SM00240)  KISc (SM00129)  PX (SM00312)  
Conserved Domain (NCBI)KIF16B
DMDM Disease mutations55614
Blocks (Seattle)KIF16B
PDB (SRS)2V14   
PDB (PDBSum)2V14   
PDB (IMB)2V14   
PDB (RSDB)2V14   
Structural Biology KnowledgeBase2V14   
SCOP (Structural Classification of Proteins)2V14   
CATH (Classification of proteins structures)2V14   
SuperfamilyQ96L93
Human Protein AtlasENSG00000089177
Peptide AtlasQ96L93
HPRD10731
IPIIPI00452246   IPI00452247   IPI00452250   IPI00651625   IPI00747865   IPI00952579   IPI00553124   
Protein Interaction databases
DIP (DOE-UCLA)Q96L93
IntAct (EBI)Q96L93
FunCoupENSG00000089177
BioGRIDKIF16B
STRING (EMBL)KIF16B
ZODIACKIF16B
Ontologies - Pathways
QuickGOQ96L93
Ontology : AmiGOformation of primary germ layer  regulation of receptor recycling  ATP binding  phosphatidylinositol-3,4,5-trisphosphate binding  endosome  early endosome  kinesin complex  microtubule  Golgi to endosome transport  microtubule-based movement  epidermal growth factor receptor signaling pathway  endoderm development  microtubule binding  fibroblast growth factor receptor signaling pathway  ATP-dependent microtubule motor activity, plus-end-directed  Rab GTPase binding  early endosome membrane  phosphatidylinositol-3-phosphate binding  receptor catabolic process  phosphatidylinositol-3,4-bisphosphate binding  early endosome to late endosome transport  phosphatidylinositol-3,5-bisphosphate binding  
Ontology : EGO-EBIformation of primary germ layer  regulation of receptor recycling  ATP binding  phosphatidylinositol-3,4,5-trisphosphate binding  endosome  early endosome  kinesin complex  microtubule  Golgi to endosome transport  microtubule-based movement  epidermal growth factor receptor signaling pathway  endoderm development  microtubule binding  fibroblast growth factor receptor signaling pathway  ATP-dependent microtubule motor activity, plus-end-directed  Rab GTPase binding  early endosome membrane  phosphatidylinositol-3-phosphate binding  receptor catabolic process  phosphatidylinositol-3,4-bisphosphate binding  early endosome to late endosome transport  phosphatidylinositol-3,5-bisphosphate binding  
NDEx NetworkKIF16B
Atlas of Cancer Signalling NetworkKIF16B
Wikipedia pathwaysKIF16B
Orthology - Evolution
OrthoDB55614
GeneTree (enSembl)ENSG00000089177
Phylogenetic Trees/Animal Genes : TreeFamKIF16B
HOVERGENQ96L93
HOGENOMQ96L93
Homologs : HomoloGeneKIF16B
Homology/Alignments : Family Browser (UCSC)KIF16B
Gene fusions - Rearrangements
Fusion: TCGAKIF16B HIPK3
Fusion: TCGAKIF16B RRBP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKIF16B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KIF16B
dbVarKIF16B
ClinVarKIF16B
1000_GenomesKIF16B 
Exome Variant ServerKIF16B
ExAC (Exome Aggregation Consortium)KIF16B (select the gene name)
Genetic variants : HAPMAP55614
Genomic Variants (DGV)KIF16B [DGVbeta]
DECIPHER (Syndromes)20:16252749-16554079  ENSG00000089177
CONAN: Copy Number AnalysisKIF16B 
Mutations
ICGC Data PortalKIF16B 
TCGA Data PortalKIF16B 
Broad Tumor PortalKIF16B
OASIS PortalKIF16B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKIF16B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKIF16B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KIF16B
DgiDB (Drug Gene Interaction Database)KIF16B
DoCM (Curated mutations)KIF16B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KIF16B (select a term)
intoGenKIF16B
Cancer3DKIF16B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKIF16B
Genetic Testing Registry KIF16B
NextProtQ96L93 [Medical]
TSGene55614
GENETestsKIF16B
Huge Navigator KIF16B [HugePedia]
snp3D : Map Gene to Disease55614
BioCentury BCIQKIF16B
ClinGenKIF16B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55614
Chemical/Pharm GKB GenePA162393227
Clinical trialKIF16B
Miscellaneous
canSAR (ICR)KIF16B (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKIF16B
EVEXKIF16B
GoPubMedKIF16B
iHOPKIF16B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:09:52 CET 2017

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