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KRT16 (keratin 16)

Identity

Other namesCK16
FNEPPK
K16
K1CP
KRT16A
NEPPK
PC1
HGNC (Hugo) KRT16
LocusID (NCBI) 3868
Atlas_Id 50129
Location 17q21.2
Location_base_pair Starts at 39766031 and ends at 39769079 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT16   6423
Cards
Entrez_Gene (NCBI)KRT16  3868  keratin 16
AliasesCK16; FNEPPK; K16; K1CP; 
KRT16A; NEPPK; PC1
GeneCards (Weizmann)KRT16
Ensembl hg19 (Hinxton)ENSG00000186832 [Gene_View]  chr17:39766031-39769079 [Contig_View]  KRT16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186832 [Gene_View]  chr17:39766031-39769079 [Contig_View]  KRT16 [Vega]
ICGC DataPortalENSG00000186832
TCGA cBioPortalKRT16
AceView (NCBI)KRT16
Genatlas (Paris)KRT16
WikiGenes3868
SOURCE (Princeton)KRT16
Genomic and cartography
GoldenPath hg19 (UCSC)KRT16  -     chr17:39766031-39769079 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT16  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRT16 - 17q21.2 [CytoView hg19]  KRT16 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT16 [Mapview hg19]  KRT16 [Mapview hg38]
OMIM148067   167200   613000   
Gene and transcription
Genbank (Entrez)AF061812 AK290853 AK309278 AK309296 BC039169
RefSeq transcript (Entrez)NM_005557
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_008301 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRT16
Cluster EST : UnigeneHs.655160 [ NCBI ]
CGAP (NCI)Hs.655160
Alternative Splicing GalleryENSG00000186832
Gene ExpressionKRT16 [ NCBI-GEO ]   KRT16 [ EBI - ARRAY_EXPRESS ]   KRT16 [ SEEK ]   KRT16 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3868
GTEX Portal (Tissue expression)KRT16
Protein : pattern, domain, 3D structure
UniProt/SwissProtP08779 (Uniprot)
NextProtP08779  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP08779
Splice isoforms : SwissVarP08779 (Swissvar)
PhosPhoSitePlusP08779
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
DMDM Disease mutations3868
Blocks (Seattle)KRT16
SuperfamilyP08779
Human Protein AtlasENSG00000186832
Peptide AtlasP08779
HPRD01018
IPIIPI00217963   IPI00795719   
Protein Interaction databases
DIP (DOE-UCLA)P08779
IntAct (EBI)P08779
FunCoupENSG00000186832
BioGRIDKRT16
STRING (EMBL)KRT16
ZODIACKRT16
Ontologies - Pathways
QuickGOP08779
Ontology : AmiGOmorphogenesis of an epithelium  structural constituent of cytoskeleton  protein binding  nucleus  cytoskeleton  intermediate filament  inflammatory response  cytoskeleton organization  aging  cell proliferation  epidermis development  keratinocyte differentiation  negative regulation of cell migration  keratinization  hair cycle  innate immune response  intermediate filament cytoskeleton organization  keratinocyte migration  establishment of skin barrier  extracellular exosome  
Ontology : EGO-EBImorphogenesis of an epithelium  structural constituent of cytoskeleton  protein binding  nucleus  cytoskeleton  intermediate filament  inflammatory response  cytoskeleton organization  aging  cell proliferation  epidermis development  keratinocyte differentiation  negative regulation of cell migration  keratinization  hair cycle  innate immune response  intermediate filament cytoskeleton organization  keratinocyte migration  establishment of skin barrier  extracellular exosome  
NDEx Network
Atlas of Cancer Signalling NetworkKRT16
Wikipedia pathwaysKRT16
Orthology - Evolution
OrthoDB3868
GeneTree (enSembl)ENSG00000186832
Phylogenetic Trees/Animal Genes : TreeFamKRT16
Homologs : HomoloGeneKRT16
Homology/Alignments : Family Browser (UCSC)KRT16
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKRT16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT16
dbVarKRT16
ClinVarKRT16
1000_GenomesKRT16 
Exome Variant ServerKRT16
ExAC (Exome Aggregation Consortium)KRT16 (select the gene name)
Genetic variants : HAPMAP3868
Genomic Variants (DGV)KRT16 [DGVbeta]
Mutations
ICGC Data PortalKRT16 
TCGA Data PortalKRT16 
Broad Tumor PortalKRT16
OASIS PortalKRT16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT16 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT16
DgiDB (Drug Gene Interaction Database)KRT16
DoCM (Curated mutations)KRT16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT16 (select a term)
intoGenKRT16
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:39766031-39769079  ENSG00000186832
CONAN: Copy Number AnalysisKRT16 
Mutations and Diseases : HGMDKRT16
OMIM148067    167200    613000   
MedgenKRT16
Genetic Testing Registry KRT16
NextProtP08779 [Medical]
TSGene3868
GENETestsKRT16
Huge Navigator KRT16 [HugePedia]
snp3D : Map Gene to Disease3868
BioCentury BCIQKRT16
ClinGenKRT16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3868
Chemical/Pharm GKB GenePA30210
Clinical trialKRT16
Miscellaneous
canSAR (ICR)KRT16 (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT16
EVEXKRT16
GoPubMedKRT16
iHOPKRT16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:08:17 CEST 2016

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