Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRT16 (keratin 16)

Identity

Other namesCK16
FNEPPK
K16
K1CP
KRT16A
NEPPK
PC1
HGNC (Hugo) KRT16
LocusID (NCBI) 3868
Location 17q21.2
Location_base_pair Starts at 39766031 and ends at 39769079 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KRT16   6423
Cards
Entrez_Gene (NCBI)KRT16  3868  keratin 16
GeneCards (Weizmann)KRT16
Ensembl hg19 (Hinxton)ENSG00000186832 [Gene_View]  chr17:39766031-39769079 [Contig_View]  KRT16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186832 [Gene_View]  chr17:39766031-39769079 [Contig_View]  KRT16 [Vega]
ICGC DataPortalENSG00000186832
cBioPortalKRT16
AceView (NCBI)KRT16
Genatlas (Paris)KRT16
WikiGenes3868
SOURCE (Princeton)KRT16
Genomic and cartography
GoldenPath hg19 (UCSC)KRT16  -     chr17:39766031-39769079 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT16  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRT16 - 17q21.2 [CytoView hg19]  KRT16 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT16 [Mapview hg19]  KRT16 [Mapview hg38]
OMIM148067   167200   613000   
Gene and transcription
Genbank (Entrez)AF061812 AK290853 BC039169 BM786499 DC394235
RefSeq transcript (Entrez)NM_005557
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_008301 NT_010783 NW_001838435 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRT16
Cluster EST : UnigeneHs.655160 [ NCBI ]
CGAP (NCI)Hs.655160
Alternative Splicing : Fast-db (Paris)GSHG0013398
Alternative Splicing GalleryENSG00000186832
Gene ExpressionKRT16 [ NCBI-GEO ]     KRT16 [ SEEK ]   KRT16 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP08779 (Uniprot)
NextProtP08779  [Medical]
With graphics : InterProP08779
Splice isoforms : SwissVarP08779 (Swissvar)
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Related proteins : CluSTrP08779
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
DMDM Disease mutations3868
Blocks (Seattle)P08779
Human Protein AtlasENSG00000186832
Peptide AtlasP08779
HPRD01018
IPIIPI00217963   IPI00795719   
Protein Interaction databases
DIP (DOE-UCLA)P08779
IntAct (EBI)P08779
FunCoupENSG00000186832
BioGRIDKRT16
IntegromeDBKRT16
STRING (EMBL)KRT16
Ontologies - Pathways
QuickGOP08779
Ontology : AmiGOstructural constituent of cytoskeleton  protein binding  nucleus  cytoskeleton  intermediate filament  cytoskeleton organization  aging  cell proliferation  epidermis development  negative regulation of cell migration  hair cycle  intermediate filament cytoskeleton organization  extracellular vesicular exosome  
Ontology : EGO-EBIstructural constituent of cytoskeleton  protein binding  nucleus  cytoskeleton  intermediate filament  cytoskeleton organization  aging  cell proliferation  epidermis development  negative regulation of cell migration  hair cycle  intermediate filament cytoskeleton organization  extracellular vesicular exosome  
Protein Interaction DatabaseKRT16
DoCM (Curated mutations)KRT16
Wikipedia pathwaysKRT16
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKRT16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT16
dbVarKRT16
ClinVarKRT16
1000_GenomesKRT16 
Exome Variant ServerKRT16
SNP (GeneSNP Utah)KRT16
SNP : HGBaseKRT16
Genetic variants : HAPMAPKRT16
Genomic VariantsKRT16  KRT16 [DGVbeta]
Mutations
ICGC Data PortalENSG00000186832 
Somatic Mutations in Cancer : COSMICKRT16 
CONAN: Copy Number AnalysisKRT16 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:39766031-39769079
Mutations and Diseases : HGMDKRT16
OMIM148067    167200    613000   
MedgenKRT16
NextProtP08779 [Medical]
GENETestsKRT16
Disease Genetic AssociationKRT16
Huge Navigator KRT16 [HugePedia]  KRT16 [HugeCancerGEM]
snp3D : Map Gene to Disease3868
DGIdb (Drug Gene Interaction db)KRT16
General knowledge
Homologs : HomoloGeneKRT16
Homology/Alignments : Family Browser (UCSC)KRT16
Phylogenetic Trees/Animal Genes : TreeFamKRT16
Chemical/Protein Interactions : CTD3868
Chemical/Pharm GKB GenePA30210
Clinical trialKRT16
Cancer Resource (Charite)ENSG00000186832
Other databases
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
CoreMineKRT16
GoPubMedKRT16
iHOPKRT16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 22:21:42 CET 2014

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