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LAGE3 (L antigen family member 3)

Identity

Alias_namesL antigen family
Alias_symbol (synonym)ITBA2
CVG5
DXS9951E
DXS9879E
ESO3
Pcc1
HGNC (Hugo) LAGE3
LocusID (NCBI) 8270
Atlas_Id 40380
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153706108 and ends at 153707596 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LAGE3   26058
Cards
Entrez_Gene (NCBI)LAGE3  8270  L antigen family member 3
AliasesCVG5; DXS9879E; DXS9951E; ESO3; 
ITBA2
GeneCards (Weizmann)LAGE3
Ensembl hg19 (Hinxton)ENSG00000196976 [Gene_View]  chrX:153706108-153707596 [Contig_View]  LAGE3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196976 [Gene_View]  chrX:153706108-153707596 [Contig_View]  LAGE3 [Vega]
ICGC DataPortalENSG00000196976
TCGA cBioPortalLAGE3
AceView (NCBI)LAGE3
Genatlas (Paris)LAGE3
WikiGenes8270
SOURCE (Princeton)LAGE3
Genetics Home Reference (NIH)LAGE3
Genomic and cartography
GoldenPath hg19 (UCSC)LAGE3  -     chrX:153706108-153707596 -  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LAGE3  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblLAGE3 - Xq28 [CytoView hg19]  LAGE3 - Xq28 [CytoView hg38]
Mapping of homologs : NCBILAGE3 [Mapview hg19]  LAGE3 [Mapview hg38]
OMIM300060   
Gene and transcription
Genbank (Entrez)BC015744 BC019012 BC062330 BQ649305 EU832327
RefSeq transcript (Entrez)NM_006014
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)LAGE3
Cluster EST : UnigeneHs.444619 [ NCBI ]
CGAP (NCI)Hs.444619
Alternative Splicing GalleryENSG00000196976
Gene ExpressionLAGE3 [ NCBI-GEO ]   LAGE3 [ EBI - ARRAY_EXPRESS ]   LAGE3 [ SEEK ]   LAGE3 [ MEM ]
Gene Expression Viewer (FireBrowse)LAGE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8270
GTEX Portal (Tissue expression)LAGE3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14657   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14657  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14657
Splice isoforms : SwissVarQ14657
PhosPhoSitePlusQ14657
Domains : Interpro (EBI)CTAG/Pcc1   
Domain families : Pfam (Sanger)Pcc1 (PF09341)   
Domain families : Pfam (NCBI)pfam09341   
Conserved Domain (NCBI)LAGE3
DMDM Disease mutations8270
Blocks (Seattle)LAGE3
SuperfamilyQ14657
Human Protein AtlasENSG00000196976
Peptide AtlasQ14657
HPRD02087
IPIIPI00032314   IPI00878749   
Protein Interaction databases
DIP (DOE-UCLA)Q14657
IntAct (EBI)Q14657
FunCoupENSG00000196976
BioGRIDLAGE3
STRING (EMBL)LAGE3
ZODIACLAGE3
Ontologies - Pathways
QuickGOQ14657
Ontology : AmiGOmolecular_function  protein binding  cellular_component  nucleus  tRNA processing  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  nucleus  tRNA processing  biological_process  
NDEx NetworkLAGE3
Atlas of Cancer Signalling NetworkLAGE3
Wikipedia pathwaysLAGE3
Orthology - Evolution
OrthoDB8270
GeneTree (enSembl)ENSG00000196976
Phylogenetic Trees/Animal Genes : TreeFamLAGE3
HOVERGENQ14657
HOGENOMQ14657
Homologs : HomoloGeneLAGE3
Homology/Alignments : Family Browser (UCSC)LAGE3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLAGE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LAGE3
dbVarLAGE3
ClinVarLAGE3
1000_GenomesLAGE3 
Exome Variant ServerLAGE3
ExAC (Exome Aggregation Consortium)LAGE3 (select the gene name)
Genetic variants : HAPMAP8270
Genomic Variants (DGV)LAGE3 [DGVbeta]
DECIPHER (Syndromes)X:153706108-153707596  ENSG00000196976
CONAN: Copy Number AnalysisLAGE3 
Mutations
ICGC Data PortalLAGE3 
TCGA Data PortalLAGE3 
Broad Tumor PortalLAGE3
OASIS PortalLAGE3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLAGE3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLAGE3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LAGE3
DgiDB (Drug Gene Interaction Database)LAGE3
DoCM (Curated mutations)LAGE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LAGE3 (select a term)
intoGenLAGE3
Cancer3DLAGE3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300060   
Orphanet
MedgenLAGE3
Genetic Testing Registry LAGE3
NextProtQ14657 [Medical]
TSGene8270
GENETestsLAGE3
Huge Navigator LAGE3 [HugePedia]
snp3D : Map Gene to Disease8270
BioCentury BCIQLAGE3
ClinGenLAGE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8270
Chemical/Pharm GKB GenePA128394540
Clinical trialLAGE3
Miscellaneous
canSAR (ICR)LAGE3 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLAGE3
EVEXLAGE3
GoPubMedLAGE3
iHOPLAGE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Nov 18 19:41:33 CET 2016

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