Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LAGE3 (L antigen family, member 3)

Identity

Other namesCVG5
DXS9879E
DXS9951E
ESO3
ITBA2
HGNC (Hugo) LAGE3
LocusID (NCBI) 8270
Location Xq28
Location_base_pair Starts at 153705241 and ends at 153707596 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)LAGE3   26058
Entrez_Gene (NCBI)LAGE3  8270  L antigen family, member 3
Cards
GeneCards (Weizmann)LAGE3
Ensembl (Hinxton)ENSG00000196976 [Gene_View]  chrX:153705241-153707596 [Contig_View]  LAGE3 [Vega]
AceView (NCBI)LAGE3
Genatlas (Paris)LAGE3
SOURCE (Stanford)NM_006014
Genomic and cartography
GoldenPath (UCSC)LAGE3  -  Xq28   chrX:153705241-153707596 -  Xq28   [Description]    (hg19-Feb_2009)
EnsemblLAGE3 - Xq28 [CytoView]
Mapping of homologs : NCBILAGE3 [Mapview]
OMIM300060   
Gene and transcription
Genbank (Entrez)BC015744 BC019012 BC062330 EU832327 EU832412
RefSeq transcript (SRS)NM_006014
RefSeq transcript (Entrez)NM_006014
RefSeq genomic (SRS)AC_000155 NC_000023 NC_018934 NT_167198 NW_001842419 NW_003871103 NW_004078126
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NT_167198 NW_001842419 NW_003871103 NW_004078126
Consensus coding sequences : CCDS (NCBI)LAGE3
Cluster EST : UnigeneHs.444619 [ SRS ] Hs.444619 [ NCBI ]
CGAP (NCI)Hs.444619
Alternative Splicing : Fast-db (Paris)GSHG0032437
Alternative Splicing GalleryENSG00000196976
Gene ExpressionLAGE3 [ NCBI-GEO ]   LAGE3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14657 (SRS) Q14657 (Uniprot)
NextProtQ14657
With graphics : InterProQ14657
Splice isoforms : SwissVarQ14657(Swissvar)
Domains : Interpro (SRS)EKC/KEOPS_Pcc1   
Domains : Interpro (EBI)EKC/KEOPS_Pcc1   
Related proteins : CluSTrQ14657
Domain families : Pfam (SRS)Pcc1 (PF09341)   
Domain families : Pfam (Sanger)Pcc1 (PF09341)   
Domain families : Pfam (NCBI)pfam09341   
DMDM8270
Blocks (Seattle)Q14657
Human Protein AtlasENSG00000196976
HPRD02087
IPIIPI00032314   IPI00878749   
Protein Interaction databases
DIP (DOE-UCLA)Q14657
IntAct (EBI)Q14657
FunCoupENSG00000196976
REACTOMELAGE3
Protein Interaction Database8270
BioGRIDLAGE3
InParanoidQ14657
Interologous Interaction database Q14657
IntegromeDBLAGE3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LAGE3
SNP (GeneSNP Utah)LAGE3
SNP : HGBaseLAGE3
Genetic variants : HAPMAPLAGE3
Somatic Mutations in Cancer : COSMICLAGE3 
CONAN: Copy Number AnalysisLAGE3 
Mutations and Diseases : HGMDLAGE3
OMIM300060   
GENETests300060   
Disease Genetic AssociationLAGE3
Huge Navigator LAGE3 [HugePedia]  LAGE3 [HugeCancerGEM]
Genomic VariantsLAGE3  LAGE3 [DGVbeta]
snp3D : Map Gene to Disease8270
General knowledge
Homologs : HomoloGeneLAGE3
Homology/Alignments : Family Browser (UCSC)LAGE3
Phylogenetic Trees/Animal Genes : TreeFamLAGE3
Chemical/Protein Interactions : CTD8270
Chemical/Pharm GKB GenePA128394540
Clinical trialLAGE3
Cancer Resource (Charite)ENSG00000196976
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
PubGeneLAGE3
iHOPLAGE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:46:03 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.