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LIN9 (lin-9 DREAM MuvB core complex component)

Identity

Alias_nameslin-9 homolog (C. elegans)
Alias_symbol (synonym)TGS
Other aliasBARA
BARPsv
Lin-9
TGS1
TGS2
HGNC (Hugo) LIN9
LocusID (NCBI) 286826
Atlas_Id 46365
Location 1q42.12  [Link to chromosome band 1q42]
Location_base_pair Starts at 226231149 and ends at 226309503 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1orf116 (1q32.1) / LIN9 (1q42.12)LIN9 (1q42.12) / KDM5B (1q32.1)LIN9 (1q42.12) / PAFAH1B2 (11q23.3)
C1orf116 1q32.1 / LIN9 1q42.12LIN9 1q42.12 / KDM5B 1q32.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LIN9   30830
Cards
Entrez_Gene (NCBI)LIN9  286826  lin-9 DREAM MuvB core complex component
AliasesBARA; BARPsv; Lin-9; TGS; 
TGS1; TGS2
GeneCards (Weizmann)LIN9
Ensembl hg19 (Hinxton)ENSG00000183814 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183814 [Gene_View]  chr1:226231149-226309503 [Contig_View]  LIN9 [Vega]
ICGC DataPortalENSG00000183814
TCGA cBioPortalLIN9
AceView (NCBI)LIN9
Genatlas (Paris)LIN9
WikiGenes286826
SOURCE (Princeton)LIN9
Genetics Home Reference (NIH)LIN9
Genomic and cartography
GoldenPath hg38 (UCSC)LIN9  -     chr1:226231149-226309503 -  1q42.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LIN9  -     1q42.12   [Description]    (hg19-Feb_2009)
EnsemblLIN9 - 1q42.12 [CytoView hg19]  LIN9 - 1q42.12 [CytoView hg38]
Mapping of homologs : NCBILIN9 [Mapview hg19]  LIN9 [Mapview hg38]
OMIM609375   
Gene and transcription
Genbank (Entrez)AF190323 AF190324 AK125690 AK126177 AK308823
RefSeq transcript (Entrez)NM_001270409 NM_001270410 NM_173083
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LIN9
Cluster EST : UnigeneHs.120817 [ NCBI ]
CGAP (NCI)Hs.120817
Alternative Splicing GalleryENSG00000183814
Gene ExpressionLIN9 [ NCBI-GEO ]   LIN9 [ EBI - ARRAY_EXPRESS ]   LIN9 [ SEEK ]   LIN9 [ MEM ]
Gene Expression Viewer (FireBrowse)LIN9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286826
GTEX Portal (Tissue expression)LIN9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TKA1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TKA1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TKA1
Splice isoforms : SwissVarQ5TKA1
PhosPhoSitePlusQ5TKA1
Domains : Interpro (EBI)DIRP    LIN-9/ALY1   
Domain families : Pfam (Sanger)DIRP (PF06584)   
Domain families : Pfam (NCBI)pfam06584   
Domain families : Smart (EMBL)DIRP (SM01135)  
Conserved Domain (NCBI)LIN9
DMDM Disease mutations286826
Blocks (Seattle)LIN9
SuperfamilyQ5TKA1
Human Protein AtlasENSG00000183814
Peptide AtlasQ5TKA1
HPRD13990
IPIIPI01012571   IPI00844013   IPI00445335   IPI00465041   IPI00946960   IPI00946841   
Protein Interaction databases
DIP (DOE-UCLA)Q5TKA1
IntAct (EBI)Q5TKA1
FunCoupENSG00000183814
BioGRIDLIN9
STRING (EMBL)LIN9
ZODIACLIN9
Ontologies - Pathways
QuickGOQ5TKA1
Ontology : AmiGOprotein binding  nucleoplasm  nucleoplasm  transcription, DNA-templated  cell cycle  transcriptional repressor complex  regulation of cell cycle  DNA biosynthetic process  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleoplasm  transcription, DNA-templated  cell cycle  transcriptional repressor complex  regulation of cell cycle  DNA biosynthetic process  
NDEx NetworkLIN9
Atlas of Cancer Signalling NetworkLIN9
Wikipedia pathwaysLIN9
Orthology - Evolution
OrthoDB286826
GeneTree (enSembl)ENSG00000183814
Phylogenetic Trees/Animal Genes : TreeFamLIN9
HOVERGENQ5TKA1
HOGENOMQ5TKA1
Homologs : HomoloGeneLIN9
Homology/Alignments : Family Browser (UCSC)LIN9
Gene fusions - Rearrangements
Fusion : MitelmanC1orf116/LIN9 [1q32.1/1q42.12]  [t(1;1)(q32;q42)]  
Fusion : MitelmanLIN9/KDM5B [1q42.12/1q32.1]  [t(1;1)(q32;q42)]  
Fusion: TCGAC1orf116 1q32.1 LIN9 1q42.12 BLCA
Fusion: TCGALIN9 1q42.12 KDM5B 1q32.1 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLIN9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LIN9
dbVarLIN9
ClinVarLIN9
1000_GenomesLIN9 
Exome Variant ServerLIN9
ExAC (Exome Aggregation Consortium)LIN9 (select the gene name)
Genetic variants : HAPMAP286826
Genomic Variants (DGV)LIN9 [DGVbeta]
DECIPHERLIN9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLIN9 
Mutations
ICGC Data PortalLIN9 
TCGA Data PortalLIN9 
Broad Tumor PortalLIN9
OASIS PortalLIN9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICLIN9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDLIN9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LIN9
DgiDB (Drug Gene Interaction Database)LIN9
DoCM (Curated mutations)LIN9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LIN9 (select a term)
intoGenLIN9
Cancer3DLIN9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609375   
Orphanet
MedgenLIN9
Genetic Testing Registry LIN9
NextProtQ5TKA1 [Medical]
TSGene286826
GENETestsLIN9
Target ValidationLIN9
Huge Navigator LIN9 [HugePedia]
snp3D : Map Gene to Disease286826
BioCentury BCIQLIN9
ClinGenLIN9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286826
Chemical/Pharm GKB GenePA134970771
Clinical trialLIN9
Miscellaneous
canSAR (ICR)LIN9 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLIN9
EVEXLIN9
GoPubMedLIN9
iHOPLIN9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:40:35 CEST 2017

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