LMCD1 (LIM and cysteine-rich domains 1)

Identity

Other names	-
HGNC	LMCD1
Location	3p26-p24
Location_base_pair	Starts at 8518511 and ends at 8584806 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	LMCD1   6633
Entrez_Gene	LMCD1  29995  LIM and cysteine-rich domains 1
	Cards
GeneCards	LMCD1
Ensembl	LMCD1 [Search_View]   ENSG00000071282 [Gene_View]
Genatlas	LMCD1
GeneLynx	LMCD1
eGenome	LMCD1
euGene	29995
	Genomic and cartography
GoldenPath	LMCD1  -     chr3:8518511-8584806 +  3p26.1   [Description]    (hg18-March_2006)
Ensembl	LMCD1 - 3p26.1 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	LMCD1
	Gene and transcription
Genbank	AF169284 [ ENTREZ ]
Genbank	AF216709 [ ENTREZ ]
Genbank	AK022176 [ ENTREZ ]
Genbank	AK294455 [ ENTREZ ]
Genbank	BC000646 [ ENTREZ ]
RefSeq	NM_014583 [ SRS ]    NM_014583 [ ENTREZ ]
RefSeq	AC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeq	AC_000135 [ SRS ]    AC_000135 [ ENTREZ ]
RefSeq	NC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeq	NT_022517 [ SRS ]    NT_022517 [ ENTREZ ]
RefSeq	NW_001838876 [ SRS ]    NW_001838876 [ ENTREZ ]
RefSeq	NW_921651 [ SRS ]    NW_921651 [ ENTREZ ]
AceView	LMCD1 AceView - NCBI
Unigene	Hs.475353 [ SRS ]    Hs.475353 [ NCBI ]     HS475353 [ spliceNest ]
Fast-db	1054 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q9NZU5 [ SRS]    Q9NZU5 [ EXPASY ]     Q9NZU5 [ INTERPRO ]     Q9NZU5 [ UNIPROT ]
Prosite	PS00478 LIM_DOMAIN_1 [ SRS ]    PS00478 LIM_DOMAIN_1 [ Expasy ]
Prosite	PS50023 LIM_DOMAIN_2 [ SRS ]    PS50023 LIM_DOMAIN_2 [ Expasy ]
Prosite	PS51303 PET [ SRS ]    PS51303 PET [ Expasy ]
Interpro	IPR010442 PET [ SRS ]    IPR010442 PET [ EBI ]
Interpro	IPR001781 Znf_LIM [ SRS ]    IPR001781 Znf_LIM [ EBI ]
CluSTr	Q9NZU5
Pfam	PF00412 LIM [ SRS ]    PF00412 LIM [ Sanger ]    pfam00412 [ NCBI-CDD ]
Pfam	PF06297 PET [ SRS ]    PF06297 PET [ Sanger ]    pfam06297 [ NCBI-CDD ]
Smart	SM00132 LIM [EMBL]
Prodom	PD000094 LIM[INRA-Toulouse]
Prodom	Q9NZU5 LMCD1_HUMAN [ Domain structure ]   Q9NZU5 LMCD1_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q9NZU5
HPRD	06891
	Protein Interaction databases
DIP	Q9NZU5
IntAct	Q9NZU5
	Polymorphism : SNP, mutations, diseases
OMIM	604859    [ map ]
GENECLINICS	604859
SNP	LMCD1 [dbSNP-NCBI]
SNP	NM_014583 [SNP-NCI]
SNP	LMCD1 [GeneSNPs - Utah]  LMCD1] [HGBASE - SRS]
HAPMAP	LMCD1 [HAPMAP]
HGMD	LMCD1
	General knowledge
Family Browser	LMCD1 [UCSC Family Browser]
SOURCE	NM_014583
SMD	Hs.475353
SAGE	Hs.475353
GO	negative regulation of transcription from RNA polymerase II promoter [Amigo]  negative regulation of transcription from RNA polymerase II promoter
GO	molecular_function [Amigo]  molecular_function
GO	transcription corepressor activity [Amigo]  transcription corepressor activity
GO	protein binding [Amigo]  protein binding
GO	cellular_component [Amigo]  cellular_component
GO	nucleus [Amigo]  nucleus
GO	biological_process [Amigo]  biological_process
GO	zinc ion binding [Amigo]  zinc ion binding
GO	metal ion binding [Amigo]  metal ion binding
PubGene	LMCD1
TreeFam	LMCD1
CTD	29995 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	LMCD1 Related clones (RZPD - Berlin)
	PubMed
PubMed	4 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:48:41 2008