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MAGEB2 (MAGE family member B2)

Identity

Alias_namesmelanoma antigen family B2
Alias_symbol (synonym)DAM6
MAGE-XP-2
MGC26438
CT3.2
Other alias
HGNC (Hugo) MAGEB2
LocusID (NCBI) 4113
Atlas_Id 41254
Location Xp21.2  [Link to chromosome band Xp21]
Location_base_pair Starts at 30215558 and ends at 30220089 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TAB3 (Xp21.2) / MAGEB2 (Xp21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MAGEB2   6809
Cards
Entrez_Gene (NCBI)MAGEB2  4113  MAGE family member B2
AliasesCT3.2; DAM6; MAGE-XP-2
GeneCards (Weizmann)MAGEB2
Ensembl hg19 (Hinxton)ENSG00000099399 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099399 [Gene_View]  chrX:30215558-30220089 [Contig_View]  MAGEB2 [Vega]
ICGC DataPortalENSG00000099399
TCGA cBioPortalMAGEB2
AceView (NCBI)MAGEB2
Genatlas (Paris)MAGEB2
WikiGenes4113
SOURCE (Princeton)MAGEB2
Genetics Home Reference (NIH)MAGEB2
Genomic and cartography
GoldenPath hg38 (UCSC)MAGEB2  -     chrX:30215558-30220089 +  Xp21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MAGEB2  -     Xp21.2   [Description]    (hg19-Feb_2009)
EnsemblMAGEB2 - Xp21.2 [CytoView hg19]  MAGEB2 - Xp21.2 [CytoView hg38]
Mapping of homologs : NCBIMAGEB2 [Mapview hg19]  MAGEB2 [Mapview hg38]
OMIM300098   
Gene and transcription
Genbank (Entrez)AF015766 AK223081 AK313347 BC026071 EU176229
RefSeq transcript (Entrez)NM_002364
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MAGEB2
Cluster EST : UnigeneHs.113824 [ NCBI ]
CGAP (NCI)Hs.113824
Alternative Splicing GalleryENSG00000099399
Gene ExpressionMAGEB2 [ NCBI-GEO ]   MAGEB2 [ EBI - ARRAY_EXPRESS ]   MAGEB2 [ SEEK ]   MAGEB2 [ MEM ]
Gene Expression Viewer (FireBrowse)MAGEB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4113
GTEX Portal (Tissue expression)MAGEB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15479   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15479  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15479
Splice isoforms : SwissVarO15479
PhosPhoSitePlusO15479
Domaine pattern : Prosite (Expaxy)MAGE (PS50838)   
Domains : Interpro (EBI)MAGE_N    MHD_dom   
Domain families : Pfam (Sanger)MAGE (PF01454)    MAGE_N (PF12440)   
Domain families : Pfam (NCBI)pfam01454    pfam12440   
Domain families : Smart (EMBL)MAGE (SM01373)  MAGE_N (SM01392)  
Conserved Domain (NCBI)MAGEB2
DMDM Disease mutations4113
Blocks (Seattle)MAGEB2
SuperfamilyO15479
Human Protein AtlasENSG00000099399
Peptide AtlasO15479
HPRD02109
IPIIPI00006726   
Protein Interaction databases
DIP (DOE-UCLA)O15479
IntAct (EBI)O15479
FunCoupENSG00000099399
BioGRIDMAGEB2
STRING (EMBL)MAGEB2
ZODIACMAGEB2
Ontologies - Pathways
QuickGOO15479
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkMAGEB2
Atlas of Cancer Signalling NetworkMAGEB2
Wikipedia pathwaysMAGEB2
Orthology - Evolution
OrthoDB4113
GeneTree (enSembl)ENSG00000099399
Phylogenetic Trees/Animal Genes : TreeFamMAGEB2
HOVERGENO15479
HOGENOMO15479
Homologs : HomoloGeneMAGEB2
Homology/Alignments : Family Browser (UCSC)MAGEB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMAGEB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MAGEB2
dbVarMAGEB2
ClinVarMAGEB2
1000_GenomesMAGEB2 
Exome Variant ServerMAGEB2
ExAC (Exome Aggregation Consortium)MAGEB2 (select the gene name)
Genetic variants : HAPMAP4113
Genomic Variants (DGV)MAGEB2 [DGVbeta]
DECIPHERMAGEB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMAGEB2 
Mutations
ICGC Data PortalMAGEB2 
TCGA Data PortalMAGEB2 
Broad Tumor PortalMAGEB2
OASIS PortalMAGEB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMAGEB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMAGEB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MAGEB2
DgiDB (Drug Gene Interaction Database)MAGEB2
DoCM (Curated mutations)MAGEB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MAGEB2 (select a term)
intoGenMAGEB2
Cancer3DMAGEB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300098   
Orphanet
MedgenMAGEB2
Genetic Testing Registry MAGEB2
NextProtO15479 [Medical]
TSGene4113
GENETestsMAGEB2
Target ValidationMAGEB2
Huge Navigator MAGEB2 [HugePedia]
snp3D : Map Gene to Disease4113
BioCentury BCIQMAGEB2
ClinGenMAGEB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4113
Chemical/Pharm GKB GenePA30555
Clinical trialMAGEB2
Miscellaneous
canSAR (ICR)MAGEB2 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMAGEB2
EVEXMAGEB2
GoPubMedMAGEB2
iHOPMAGEB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:41:59 CEST 2017

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