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MBD1 (methyl-CpG binding domain protein 1)

Identity

Alias (NCBI)CXXC3
PCM1
RFT
HGNC (Hugo) MBD1
HGNC Alias symbPCM1
CXXC3
LocusID (NCBI) 4152
Atlas_Id 41308
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 50268846 and ends at 50281774 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGAP6 (Xp22.2)::MBD1 (18q21.1)JAK2 (9p24.1)::MBD1 (18q21.1)MBD1 (18q21.1)::CFAP53 (18q21.1)
MBD1 (18q21.1)::JAK2 (9p24.1)MBD1 (18q21.1)::RET (10q11.21)RET (10q11.21)::MBD1 (18q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Breakpoints

 


External links

Nomenclature
HGNC (Hugo)MBD1   6916
Cards
Entrez_Gene (NCBI)MBD1    methyl-CpG binding domain protein 1
AliasesCXXC3; PCM1; RFT
GeneCards (Weizmann)MBD1
Ensembl hg19 (Hinxton)ENSG00000141644 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141644 [Gene_View]  ENSG00000141644 [Sequence]  chr18:50268846-50281774 [Contig_View]  MBD1 [Vega]
ICGC DataPortalENSG00000141644
TCGA cBioPortalMBD1
AceView (NCBI)MBD1
Genatlas (Paris)MBD1
SOURCE (Princeton)MBD1
Genetics Home Reference (NIH)MBD1
Genomic and cartography
GoldenPath hg38 (UCSC)MBD1  -     chr18:50268846-50281774 -  18q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MBD1  -     18q21.1   [Description]    (hg19-Feb_2009)
GoldenPathMBD1 - 18q21.1 [CytoView hg19]  MBD1 - 18q21.1 [CytoView hg38]
ImmunoBaseENSG00000141644
Genome Data Viewer NCBIMBD1 [Mapview hg19]  
OMIM156535   
Gene and transcription
Genbank (Entrez)AB209765 AF072241 AF078830 AF078831 AF078832
RefSeq transcript (Entrez)NM_001204136 NM_001204137 NM_001204138 NM_001204139 NM_001204140 NM_001204141 NM_001204142 NM_001204143 NM_001204151 NM_001323942 NM_001323947 NM_001323949 NM_001323950 NM_001323951 NM_001323952 NM_001323953 NM_001323954 NM_001388138 NM_001388139 NM_001388140 NM_001388141 NM_001388142 NM_001388143 NM_001388144 NM_001388145 NM_001388146 NM_001388147 NM_001388148 NM_001388149 NM_001388150 NM_001388151 NM_001388152 NM_001388153 NM_001388154 NM_001388155 NM_001388156 NM_001388157 NM_001388158 NM_001388159 NM_001388160 NM_001388161 NM_001388162 NM_001388163 NM_001388164 NM_001388165 NM_001388166 NM_001388167 NM_002384 NM_015844 NM_015845 NM_015846 NM_015847
Consensus coding sequences : CCDS (NCBI)MBD1
Gene ExpressionMBD1 [ NCBI-GEO ]   MBD1 [ EBI - ARRAY_EXPRESS ]   MBD1 [ SEEK ]   MBD1 [ MEM ]
Gene Expression Viewer (FireBrowse)MBD1 [ Firebrowse - Broad ]
GenevisibleExpression of MBD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4152
GTEX Portal (Tissue expression)MBD1
Human Protein AtlasENSG00000141644-MBD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MBD1
Human Protein Atlas [tissue]ENSG00000141644-MBD1 [tissue]
HPRD01133
Protein Interaction databases
BioGRIDMBD1
STRING (EMBL)MBD1
ZODIACMBD1
Ontologies - Pathways
Litterature
PubMed84 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMBD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jan 20 12:43:28 CET 2022

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