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MED19 (mediator complex subunit 19)

Identity

Alias_namesmediator of RNA polymerase II transcription
Alias_symbol (synonym)LCMR1
Other aliasDT2P1G7
MED19AS
HGNC (Hugo) MED19
LocusID (NCBI) 219541
Atlas_Id 41131
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 57471181 and ends at 57479795 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SSRP1 (11q12.1) / MED19 (11q12.1)SSRP1 11q12.1 / MED19 11q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MED19   29600
Cards
Entrez_Gene (NCBI)MED19  219541  mediator complex subunit 19
AliasesDT2P1G7; LCMR1; MED19AS
GeneCards (Weizmann)MED19
Ensembl hg19 (Hinxton)ENSG00000156603 [Gene_View]  chr11:57471181-57479795 [Contig_View]  MED19 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156603 [Gene_View]  chr11:57471181-57479795 [Contig_View]  MED19 [Vega]
ICGC DataPortalENSG00000156603
TCGA cBioPortalMED19
AceView (NCBI)MED19
Genatlas (Paris)MED19
WikiGenes219541
SOURCE (Princeton)MED19
Genetics Home Reference (NIH)MED19
Genomic and cartography
GoldenPath hg19 (UCSC)MED19  -     chr11:57471181-57479795 -  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MED19  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblMED19 - 11q12.1 [CytoView hg19]  MED19 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIMED19 [Mapview hg19]  MED19 [Mapview hg38]
OMIM612385   
Gene and transcription
Genbank (Entrez)AA972146 AY148462 BC009723 BC037223 DB457116
RefSeq transcript (Entrez)NM_001317078 NM_153450
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)MED19
Cluster EST : UnigeneHs.43619 [ NCBI ]
CGAP (NCI)Hs.43619
Alternative Splicing GalleryENSG00000156603
Gene ExpressionMED19 [ NCBI-GEO ]   MED19 [ EBI - ARRAY_EXPRESS ]   MED19 [ SEEK ]   MED19 [ MEM ]
Gene Expression Viewer (FireBrowse)MED19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219541
GTEX Portal (Tissue expression)MED19
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0JLT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0JLT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0JLT2
Splice isoforms : SwissVarA0JLT2
PhosPhoSitePlusA0JLT2
Domains : Interpro (EBI)Mediator_Med19_met   
Domain families : Pfam (Sanger)Med19 (PF10278)   
Domain families : Pfam (NCBI)pfam10278   
Conserved Domain (NCBI)MED19
DMDM Disease mutations219541
Blocks (Seattle)MED19
SuperfamilyA0JLT2
Human Protein AtlasENSG00000156603
Peptide AtlasA0JLT2
HPRD17477
IPIIPI00217978   IPI00185518   
Protein Interaction databases
DIP (DOE-UCLA)A0JLT2
IntAct (EBI)A0JLT2
FunCoupENSG00000156603
BioGRIDMED19
STRING (EMBL)MED19
ZODIACMED19
Ontologies - Pathways
QuickGOA0JLT2
Ontology : AmiGORNA polymerase II transcription cofactor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  mediator complex  
Ontology : EGO-EBIRNA polymerase II transcription cofactor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  mediator complex  
NDEx NetworkMED19
Atlas of Cancer Signalling NetworkMED19
Wikipedia pathwaysMED19
Orthology - Evolution
OrthoDB219541
GeneTree (enSembl)ENSG00000156603
Phylogenetic Trees/Animal Genes : TreeFamMED19
HOVERGENA0JLT2
HOGENOMA0JLT2
Homologs : HomoloGeneMED19
Homology/Alignments : Family Browser (UCSC)MED19
Gene fusions - Rearrangements
Fusion : MitelmanSSRP1/MED19 [11q12.1/11q12.1]  [t(11;11)(q12;q12)]  
Fusion: TCGASSRP1 11q12.1 MED19 11q12.1 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMED19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MED19
dbVarMED19
ClinVarMED19
1000_GenomesMED19 
Exome Variant ServerMED19
ExAC (Exome Aggregation Consortium)MED19 (select the gene name)
Genetic variants : HAPMAP219541
Genomic Variants (DGV)MED19 [DGVbeta]
DECIPHER (Syndromes)11:57471181-57479795  ENSG00000156603
CONAN: Copy Number AnalysisMED19 
Mutations
ICGC Data PortalMED19 
TCGA Data PortalMED19 
Broad Tumor PortalMED19
OASIS PortalMED19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMED19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMED19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MED19
DgiDB (Drug Gene Interaction Database)MED19
DoCM (Curated mutations)MED19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MED19 (select a term)
intoGenMED19
Cancer3DMED19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612385   
Orphanet
MedgenMED19
Genetic Testing Registry MED19
NextProtA0JLT2 [Medical]
TSGene219541
GENETestsMED19
Huge Navigator MED19 [HugePedia]
snp3D : Map Gene to Disease219541
BioCentury BCIQMED19
ClinGenMED19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219541
Chemical/Pharm GKB GenePA134926032
Clinical trialMED19
Miscellaneous
canSAR (ICR)MED19 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMED19
EVEXMED19
GoPubMedMED19
iHOPMED19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:14:52 CET 2017

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