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NCAM2 (neural cell adhesion molecule 2)

Identity

Alias (NCBI)NCAM21
HGNC (Hugo) NCAM2
HGNC Alias symbNCAM21
MGC51008
LocusID (NCBI) 4685
Atlas_Id 41504
Location 21q21.1  [Link to chromosome band 21q21]
Location_base_pair Starts at 20998409 and ends at 21543329 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLDN11 (3q26.2) / NCAM2 (21q21.1)GNS (12q14.3) / NCAM2 (21q21.1)HNRNPF (10q11.21) / NCAM2 (21q21.1)
NCAM2 (21q21.1) / CRYL1 (13q12.11)NCAM2 (21q21.1) / GRIK1 (21q21.3)NCAM2 (21q21.1) / ILF2 (1q21.3)
NCAM2 (21q21.1) / PID1 (2q36.3)PDE7A (8q13.1) / NCAM2 (21q21.1)TEC (4p12) / NCAM2 (21q21.1)
TSPYL2 (Xp11.22) / NCAM2 (21q21.1)ZNF146 (19q13.12) / NCAM2 (21q21.1)NCAM2 21q21.1 / CRYL1 13q12.11
PDE7A 8q13.1 / NCAM2 21q21.1TEC - / NCAM2 21q21.1ZNF146 19q13.12 / NCAM2 21q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NCAM2   7657
Cards
Entrez_Gene (NCBI)NCAM2    neural cell adhesion molecule 2
AliasesNCAM21
GeneCards (Weizmann)NCAM2
Ensembl hg19 (Hinxton)ENSG00000154654 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154654 [Gene_View]  ENSG00000154654 [Sequence]  chr21:20998409-21543329 [Contig_View]  NCAM2 [Vega]
ICGC DataPortalENSG00000154654
TCGA cBioPortalNCAM2
AceView (NCBI)NCAM2
Genatlas (Paris)NCAM2
SOURCE (Princeton)NCAM2
Genetics Home Reference (NIH)NCAM2
Genomic and cartography
GoldenPath hg38 (UCSC)NCAM2  -     chr21:20998409-21543329 +  21q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NCAM2  -     21q21.1   [Description]    (hg19-Feb_2009)
GoldenPathNCAM2 - 21q21.1 [CytoView hg19]  NCAM2 - 21q21.1 [CytoView hg38]
ImmunoBaseENSG00000154654
Genome Data Viewer NCBINCAM2 [Mapview hg19]  
OMIM602040   
Gene and transcription
Genbank (Entrez)AA234378 AI207079 AI500562 AK299054 AK302870
RefSeq transcript (Entrez)NM_001352591 NM_001352592 NM_001352593 NM_001352594 NM_001352595 NM_001352596 NM_001352597 NM_004540
Consensus coding sequences : CCDS (NCBI)NCAM2
Gene ExpressionNCAM2 [ NCBI-GEO ]   NCAM2 [ EBI - ARRAY_EXPRESS ]   NCAM2 [ SEEK ]   NCAM2 [ MEM ]
Gene Expression Viewer (FireBrowse)NCAM2 [ Firebrowse - Broad ]
GenevisibleExpression of NCAM2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4685
GTEX Portal (Tissue expression)NCAM2
Human Protein AtlasENSG00000154654-NCAM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15394   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15394  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15394
PhosPhoSitePlusO15394
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    FN3_sf    Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Ig_V-set    Neural_cell_adh   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  
Conserved Domain (NCBI)NCAM2
PDB (RSDB)2DOC    2JLL    2KBG    2V5T    2VAJ    2WIM    2XY1    2XY2    2XYC   
PDB Europe2DOC    2JLL    2KBG    2V5T    2VAJ    2WIM    2XY1    2XY2    2XYC   
PDB (PDBSum)2DOC    2JLL    2KBG    2V5T    2VAJ    2WIM    2XY1    2XY2    2XYC   
PDB (IMB)2DOC    2JLL    2KBG    2V5T    2VAJ    2WIM    2XY1    2XY2    2XYC   
Structural Biology KnowledgeBase2DOC    2JLL    2KBG    2V5T    2VAJ    2WIM    2XY1    2XY2    2XYC   
SCOP (Structural Classification of Proteins)2DOC    2JLL    2KBG    2V5T    2VAJ    2WIM    2XY1    2XY2    2XYC   
CATH (Classification of proteins structures)2DOC    2JLL    2KBG    2V5T    2VAJ    2WIM    2XY1    2XY2    2XYC   
SuperfamilyO15394
AlphaFold pdb e-kbO15394   
Human Protein Atlas [tissue]ENSG00000154654-NCAM2 [tissue]
HPRD03619
Protein Interaction databases
DIP (DOE-UCLA)O15394
IntAct (EBI)O15394
BioGRIDNCAM2
STRING (EMBL)NCAM2
ZODIACNCAM2
Ontologies - Pathways
QuickGOO15394
Ontology : AmiGOplasma membrane  neuron cell-cell adhesion  axonal fasciculation  sensory perception of smell  integral component of membrane  nuclear body  axon  identical protein binding  neuron projection  
Ontology : EGO-EBIplasma membrane  neuron cell-cell adhesion  axonal fasciculation  sensory perception of smell  integral component of membrane  nuclear body  axon  identical protein binding  neuron projection  
Pathways : KEGGCell adhesion molecules (CAMs)    Prion diseases   
NDEx NetworkNCAM2
Atlas of Cancer Signalling NetworkNCAM2
Wikipedia pathwaysNCAM2
Orthology - Evolution
OrthoDB4685
GeneTree (enSembl)ENSG00000154654
Phylogenetic Trees/Animal Genes : TreeFamNCAM2
Homologs : HomoloGeneNCAM2
Homology/Alignments : Family Browser (UCSC)NCAM2
Gene fusions - Rearrangements
Fusion : MitelmanNCAM2/CRYL1 [21q21.1/13q12.11]  
Fusion : MitelmanPDE7A/NCAM2 [8q13.1/21q21.1]  
Fusion : MitelmanTEC/NCAM2 [-/21q21.1]  
Fusion : MitelmanZNF146/NCAM2 [19q13.12/21q21.1]  
Fusion : QuiverNCAM2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNCAM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NCAM2
dbVarNCAM2
ClinVarNCAM2
MonarchNCAM2
1000_GenomesNCAM2 
Exome Variant ServerNCAM2
GNOMAD BrowserENSG00000154654
Varsome BrowserNCAM2
ACMGNCAM2 variants
VarityO15394
Genomic Variants (DGV)NCAM2 [DGVbeta]
DECIPHERNCAM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNCAM2 
Mutations
ICGC Data PortalNCAM2 
TCGA Data PortalNCAM2 
Broad Tumor PortalNCAM2
OASIS PortalNCAM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNCAM2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNCAM2
Mutations and Diseases : HGMDNCAM2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNCAM2
DgiDB (Drug Gene Interaction Database)NCAM2
DoCM (Curated mutations)NCAM2
CIViC (Clinical Interpretations of Variants in Cancer)NCAM2
Cancer3DNCAM2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602040   
Orphanet
DisGeNETNCAM2
MedgenNCAM2
Genetic Testing Registry NCAM2
NextProtO15394 [Medical]
GENETestsNCAM2
Target ValidationNCAM2
Huge Navigator NCAM2 [HugePedia]
ClinGenNCAM2
Clinical trials, drugs, therapy
MyCancerGenomeNCAM2
Protein Interactions : CTDNCAM2
Pharm GKB GenePA31460
PharosO15394
Clinical trialNCAM2
Miscellaneous
canSAR (ICR)NCAM2
HarmonizomeNCAM2
DataMed IndexNCAM2
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNCAM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:22:13 CEST 2021

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