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NMRAL1 (NmrA like redox sensor 1)

Identity

Alias_namesmember 1
Alias_symbol (synonym)FLJ25918
HSCARG
SDR48A1
Other alias
HGNC (Hugo) NMRAL1
LocusID (NCBI) 57407
Atlas_Id 52920
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4461677 and ends at 4474650 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NMRAL1 (16p13.3) / B4GALT1 (9p21.1)NMRAL1 (16p13.3) / RASSF4 (10q11.21)NMRAL1 (16p13.3) / ZNF512B (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NMRAL1   24987
Cards
Entrez_Gene (NCBI)NMRAL1  57407  NmrA like redox sensor 1
AliasesHSCARG; SDR48A1
GeneCards (Weizmann)NMRAL1
Ensembl hg19 (Hinxton)ENSG00000153406 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153406 [Gene_View]  chr16:4461677-4474650 [Contig_View]  NMRAL1 [Vega]
ICGC DataPortalENSG00000153406
TCGA cBioPortalNMRAL1
AceView (NCBI)NMRAL1
Genatlas (Paris)NMRAL1
WikiGenes57407
SOURCE (Princeton)NMRAL1
Genetics Home Reference (NIH)NMRAL1
Genomic and cartography
GoldenPath hg38 (UCSC)NMRAL1  -     chr16:4461677-4474650 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NMRAL1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblNMRAL1 - 16p13.3 [CytoView hg19]  NMRAL1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBINMRAL1 [Mapview hg19]  NMRAL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF225419 AK098784 AW246763 BC002927 BC007364
RefSeq transcript (Entrez)NM_001305141 NM_001305142 NM_020677
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187608
Consensus coding sequences : CCDS (NCBI)NMRAL1
Cluster EST : UnigeneHs.288969 [ NCBI ]
CGAP (NCI)Hs.288969
Alternative Splicing GalleryENSG00000153406
Gene ExpressionNMRAL1 [ NCBI-GEO ]   NMRAL1 [ EBI - ARRAY_EXPRESS ]   NMRAL1 [ SEEK ]   NMRAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)NMRAL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57407
GTEX Portal (Tissue expression)NMRAL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBL8
Splice isoforms : SwissVarQ9HBL8
PhosPhoSitePlusQ9HBL8
Domains : Interpro (EBI)NAD(P)-bd_dom    NmrA-like   
Domain families : Pfam (Sanger)NmrA (PF05368)   
Domain families : Pfam (NCBI)pfam05368   
Conserved Domain (NCBI)NMRAL1
DMDM Disease mutations57407
Blocks (Seattle)NMRAL1
PDB (SRS)2EXX    2WM3    2WMD    3DXF    3E5M   
PDB (PDBSum)2EXX    2WM3    2WMD    3DXF    3E5M   
PDB (IMB)2EXX    2WM3    2WMD    3DXF    3E5M   
PDB (RSDB)2EXX    2WM3    2WMD    3DXF    3E5M   
Structural Biology KnowledgeBase2EXX    2WM3    2WMD    3DXF    3E5M   
SCOP (Structural Classification of Proteins)2EXX    2WM3    2WMD    3DXF    3E5M   
CATH (Classification of proteins structures)2EXX    2WM3    2WMD    3DXF    3E5M   
SuperfamilyQ9HBL8
Human Protein AtlasENSG00000153406
Peptide AtlasQ9HBL8
HPRD13678
IPIIPI00745792   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBL8
IntAct (EBI)Q9HBL8
FunCoupENSG00000153406
BioGRIDNMRAL1
STRING (EMBL)NMRAL1
ZODIACNMRAL1
Ontologies - Pathways
QuickGOQ9HBL8
Ontology : AmiGOurea cycle  nucleus  cytosol  perinuclear region of cytoplasm  
Ontology : EGO-EBIurea cycle  nucleus  cytosol  perinuclear region of cytoplasm  
NDEx NetworkNMRAL1
Atlas of Cancer Signalling NetworkNMRAL1
Wikipedia pathwaysNMRAL1
Orthology - Evolution
OrthoDB57407
GeneTree (enSembl)ENSG00000153406
Phylogenetic Trees/Animal Genes : TreeFamNMRAL1
HOVERGENQ9HBL8
HOGENOMQ9HBL8
Homologs : HomoloGeneNMRAL1
Homology/Alignments : Family Browser (UCSC)NMRAL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNMRAL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NMRAL1
dbVarNMRAL1
ClinVarNMRAL1
1000_GenomesNMRAL1 
Exome Variant ServerNMRAL1
ExAC (Exome Aggregation Consortium)NMRAL1 (select the gene name)
Genetic variants : HAPMAP57407
Genomic Variants (DGV)NMRAL1 [DGVbeta]
DECIPHERNMRAL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNMRAL1 
Mutations
ICGC Data PortalNMRAL1 
TCGA Data PortalNMRAL1 
Broad Tumor PortalNMRAL1
OASIS PortalNMRAL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNMRAL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNMRAL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NMRAL1
DgiDB (Drug Gene Interaction Database)NMRAL1
DoCM (Curated mutations)NMRAL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NMRAL1 (select a term)
intoGenNMRAL1
Cancer3DNMRAL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNMRAL1
Genetic Testing Registry NMRAL1
NextProtQ9HBL8 [Medical]
TSGene57407
GENETestsNMRAL1
Huge Navigator NMRAL1 [HugePedia]
snp3D : Map Gene to Disease57407
BioCentury BCIQNMRAL1
ClinGenNMRAL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57407
Chemical/Pharm GKB GenePA145007922
Clinical trialNMRAL1
Miscellaneous
canSAR (ICR)NMRAL1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNMRAL1
EVEXNMRAL1
GoPubMedNMRAL1
iHOPNMRAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:28:51 CEST 2017

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