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NPTX2 (neuronal pentraxin 2)

Identity

Alias_namesneuronal pentraxin II
Other aliasNARP
NP-II
NP2
HGNC (Hugo) NPTX2
LocusID (NCBI) 4885
Atlas_Id 49994
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 98617285 and ends at 98629869 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPTX2   7953
Cards
Entrez_Gene (NCBI)NPTX2  4885  neuronal pentraxin 2
AliasesNARP; NP-II; NP2
GeneCards (Weizmann)NPTX2
Ensembl hg19 (Hinxton)ENSG00000106236 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106236 [Gene_View]  chr7:98617285-98629869 [Contig_View]  NPTX2 [Vega]
ICGC DataPortalENSG00000106236
TCGA cBioPortalNPTX2
AceView (NCBI)NPTX2
Genatlas (Paris)NPTX2
WikiGenes4885
SOURCE (Princeton)NPTX2
Genetics Home Reference (NIH)NPTX2
Genomic and cartography
GoldenPath hg38 (UCSC)NPTX2  -     chr7:98617285-98629869 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPTX2  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblNPTX2 - 7q22.1 [CytoView hg19]  NPTX2 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBINPTX2 [Mapview hg19]  NPTX2 [Mapview hg38]
OMIM600750   
Gene and transcription
Genbank (Entrez)AK311250 BC009924 BC034781 BC035339 BC048275
RefSeq transcript (Entrez)NM_002523
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPTX2
Cluster EST : UnigeneHs.3281 [ NCBI ]
CGAP (NCI)Hs.3281
Alternative Splicing GalleryENSG00000106236
Gene ExpressionNPTX2 [ NCBI-GEO ]   NPTX2 [ EBI - ARRAY_EXPRESS ]   NPTX2 [ SEEK ]   NPTX2 [ MEM ]
Gene Expression Viewer (FireBrowse)NPTX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4885
GTEX Portal (Tissue expression)NPTX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47972   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47972  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47972
Splice isoforms : SwissVarP47972
PhosPhoSitePlusP47972
Domaine pattern : Prosite (Expaxy)PTX_1 (PS00289)    PTX_2 (PS51828)   
Domains : Interpro (EBI)ConA-like_dom    Pentaxin_CS    Pentraxin-related   
Domain families : Pfam (Sanger)Pentaxin (PF00354)   
Domain families : Pfam (NCBI)pfam00354   
Domain families : Smart (EMBL)PTX (SM00159)  
Conserved Domain (NCBI)NPTX2
DMDM Disease mutations4885
Blocks (Seattle)NPTX2
SuperfamilyP47972
Human Protein AtlasENSG00000106236
Peptide AtlasP47972
HPRD02853
IPIIPI00026946   
Protein Interaction databases
DIP (DOE-UCLA)P47972
IntAct (EBI)P47972
FunCoupENSG00000106236
BioGRIDNPTX2
STRING (EMBL)NPTX2
ZODIACNPTX2
Ontologies - Pathways
QuickGOP47972
Ontology : AmiGOmolecular_function  cellular_component  extracellular region  chemical synaptic transmission  associative learning  carbohydrate binding  metal ion binding  
Ontology : EGO-EBImolecular_function  cellular_component  extracellular region  chemical synaptic transmission  associative learning  carbohydrate binding  metal ion binding  
NDEx NetworkNPTX2
Atlas of Cancer Signalling NetworkNPTX2
Wikipedia pathwaysNPTX2
Orthology - Evolution
OrthoDB4885
GeneTree (enSembl)ENSG00000106236
Phylogenetic Trees/Animal Genes : TreeFamNPTX2
HOVERGENP47972
HOGENOMP47972
Homologs : HomoloGeneNPTX2
Homology/Alignments : Family Browser (UCSC)NPTX2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPTX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPTX2
dbVarNPTX2
ClinVarNPTX2
1000_GenomesNPTX2 
Exome Variant ServerNPTX2
ExAC (Exome Aggregation Consortium)NPTX2 (select the gene name)
Genetic variants : HAPMAP4885
Genomic Variants (DGV)NPTX2 [DGVbeta]
DECIPHERNPTX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPTX2 
Mutations
ICGC Data PortalNPTX2 
TCGA Data PortalNPTX2 
Broad Tumor PortalNPTX2
OASIS PortalNPTX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPTX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNPTX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPTX2
DgiDB (Drug Gene Interaction Database)NPTX2
DoCM (Curated mutations)NPTX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPTX2 (select a term)
intoGenNPTX2
Cancer3DNPTX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600750   
Orphanet
MedgenNPTX2
Genetic Testing Registry NPTX2
NextProtP47972 [Medical]
TSGene4885
GENETestsNPTX2
Target ValidationNPTX2
Huge Navigator NPTX2 [HugePedia]
snp3D : Map Gene to Disease4885
BioCentury BCIQNPTX2
ClinGenNPTX2 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4885
Chemical/Pharm GKB GenePA31739
Clinical trialNPTX2
Miscellaneous
canSAR (ICR)NPTX2 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPTX2
EVEXNPTX2
GoPubMedNPTX2
iHOPNPTX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:47:18 CEST 2017

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