Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PANX2 (pannexin 2)

Identity

Other namesPX2
hPANX2
HGNC (Hugo) PANX2
LocusID (NCBI) 56666
Location 22q13.33
Location_base_pair Starts at 50609160 and ends at 50618724 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PANX2   8600
Entrez_Gene (NCBI)PANX2  56666  pannexin 2
Cards
GeneCards (Weizmann)PANX2
Ensembl (Hinxton)ENSG00000073150 [Gene_View]  chr22:50609160-50618724 [Contig_View]  PANX2 [Vega]
AceView (NCBI)PANX2
Genatlas (Paris)PANX2
SOURCE (Stanford)NM_001160300 NM_052839
Genomic and cartography
GoldenPath (UCSC)PANX2  -  22q13.33   chr22:50609160-50618724 +  22q13.33   [Description]    (hg19-Feb_2009)
EnsemblPANX2 - 22q13.33 [CytoView]
Mapping of homologs : NCBIPANX2 [Mapview]
OMIM608421   
Gene and transcription
Genbank (Entrez)AF398510 AF398511 AK096019 AK123508 AK299910
RefSeq transcript (SRS)NM_001160300 NM_052839
RefSeq transcript (Entrez)NM_001160300 NM_052839
RefSeq genomic (SRS)AC_000154 NC_000022 NC_018933 NT_011526 NW_001838755 NW_004078112
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011526 NW_001838755 NW_004078112
Consensus coding sequences : CCDS (NCBI)PANX2
Cluster EST : UnigeneHs.440092 [ SRS ] Hs.440092 [ NCBI ]
CGAP (NCI)Hs.440092
Alternative Splicing : Fast-db (Paris)GSHG0020134
Alternative Splicing GalleryENSG00000073150
Gene ExpressionPANX2 [ NCBI-GEO ]   PANX2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RD6 (SRS) Q96RD6 (Uniprot)
NextProtQ96RD6
With graphics : InterProQ96RD6
Splice isoforms : SwissVarQ96RD6(Swissvar)
Domaine pattern : Prosite (SRS)PANNEXIN (PS51013)   
Domaine pattern : Prosite (Expaxy)PANNEXIN (PS51013)   
Domains : Interpro (SRS)Innexin   
Domains : Interpro (EBI)Innexin   
Related proteins : CluSTrQ96RD6
Domain families : Pfam (SRS)Innexin (PF00876)   
Domain families : Pfam (Sanger)Innexin (PF00876)   
Domain families : Pfam (NCBI)pfam00876   
DMDM56666
Blocks (Seattle)Q96RD6
Human Protein AtlasENSG00000073150
HPRD09760
IPIIPI00066288   IPI00472910   IPI00964395   IPI00645328   IPI00852585   
Protein Interaction databases
DIP (DOE-UCLA)Q96RD6
IntAct (EBI)Q96RD6
FunCoupENSG00000073150
REACTOMEPANX2
Protein Interaction Database56666
BioGRIDPANX2
InParanoidQ96RD6
Interologous Interaction database Q96RD6
IntegromeDBPANX2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PANX2
SNP (GeneSNP Utah)PANX2
SNP : HGBasePANX2
Genetic variants : HAPMAPPANX2
Somatic Mutations in Cancer : COSMICPANX2 
CONAN: Copy Number AnalysisPANX2 
Mutations and Diseases : HGMDPANX2
OMIM608421   
GENETests608421   
Disease Genetic AssociationPANX2
Huge Navigator PANX2 [HugePedia]  PANX2 [HugeCancerGEM]
Genomic VariantsPANX2  PANX2 [DGVbeta]
snp3D : Map Gene to Disease56666
General knowledge
Homologs : HomoloGenePANX2
Homology/Alignments : Family Browser (UCSC)PANX2
Phylogenetic Trees/Animal Genes : TreeFamPANX2
Chemical/Protein Interactions : CTD56666
Chemical/Pharm GKB GenePA32930
Clinical trialPANX2
Cancer Resource (Charite)ENSG00000073150
Ontology : AmiGOresponse to ischemia  ion channel activity  cytoplasm  plasma membrane  gap junction  synaptic transmission  integral to membrane  protein hexamerization  protein heterodimerization activity  gap junction hemi-channel activity  
Ontology : EGO-EBIresponse to ischemia  ion channel activity  cytoplasm  plasma membrane  gap junction  synaptic transmission  integral to membrane  protein hexamerization  protein heterodimerization activity  gap junction hemi-channel activity  
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
PubGenePANX2
iHOPPANX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:34:04 CEST 2013
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