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PCDH10 (protocadherin 10)

Identity

Alias_symbol (synonym)OL-PCDH
KIAA1400
Other aliasPCDH19
HGNC (Hugo) PCDH10
LocusID (NCBI) 57575
Atlas_Id 46192
Location 4q28.3  [Link to chromosome band 4q28]
Location_base_pair Starts at 133149290 and ends at 133153875 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCDH10 (4q28.3) / CHMP1A (16q24.3)PCDH10 (4q28.3) / SLC11A2 (12q13.12)PCDH10 (4q28.3) / UBAP1 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDH10   13404
Cards
Entrez_Gene (NCBI)PCDH10  57575  protocadherin 10
AliasesOL-PCDH; PCDH19
GeneCards (Weizmann)PCDH10
Ensembl hg19 (Hinxton)ENSG00000138650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138650 [Gene_View]  chr4:133149290-133153875 [Contig_View]  PCDH10 [Vega]
ICGC DataPortalENSG00000138650
TCGA cBioPortalPCDH10
AceView (NCBI)PCDH10
Genatlas (Paris)PCDH10
WikiGenes57575
SOURCE (Princeton)PCDH10
Genetics Home Reference (NIH)PCDH10
Genomic and cartography
GoldenPath hg38 (UCSC)PCDH10  -     chr4:133149290-133153875 +  4q28.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDH10  -     4q28.3   [Description]    (hg19-Feb_2009)
EnsemblPCDH10 - 4q28.3 [CytoView hg19]  PCDH10 - 4q28.3 [CytoView hg38]
Mapping of homologs : NCBIPCDH10 [Mapview hg19]  PCDH10 [Mapview hg38]
OMIM608286   
Gene and transcription
Genbank (Entrez)AB037821 AI479918 AK024636 AK314377 AL157470
RefSeq transcript (Entrez)NM_020815 NM_032961
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDH10
Cluster EST : UnigeneHs.669234 [ NCBI ]
CGAP (NCI)Hs.669234
Alternative Splicing GalleryENSG00000138650
Gene ExpressionPCDH10 [ NCBI-GEO ]   PCDH10 [ EBI - ARRAY_EXPRESS ]   PCDH10 [ SEEK ]   PCDH10 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDH10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57575
GTEX Portal (Tissue expression)PCDH10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2E7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2E7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2E7
Splice isoforms : SwissVarQ9P2E7
PhosPhoSitePlusQ9P2E7
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_C    Cadherin_CS    Cadherin_N    Protocadherin-10   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_C_2 (PF16492)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam16492   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDH10
DMDM Disease mutations57575
Blocks (Seattle)PCDH10
SuperfamilyQ9P2E7
Human Protein AtlasENSG00000138650
Peptide AtlasQ9P2E7
HPRD12204
IPIIPI00002142   IPI00010826   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2E7
IntAct (EBI)Q9P2E7
FunCoupENSG00000138650
BioGRIDPCDH10
STRING (EMBL)PCDH10
ZODIACPCDH10
Ontologies - Pathways
QuickGOQ9P2E7
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDH10
Atlas of Cancer Signalling NetworkPCDH10
Wikipedia pathwaysPCDH10
Orthology - Evolution
OrthoDB57575
GeneTree (enSembl)ENSG00000138650
Phylogenetic Trees/Animal Genes : TreeFamPCDH10
HOVERGENQ9P2E7
HOGENOMQ9P2E7
Homologs : HomoloGenePCDH10
Homology/Alignments : Family Browser (UCSC)PCDH10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDH10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDH10
dbVarPCDH10
ClinVarPCDH10
1000_GenomesPCDH10 
Exome Variant ServerPCDH10
ExAC (Exome Aggregation Consortium)PCDH10 (select the gene name)
Genetic variants : HAPMAP57575
Genomic Variants (DGV)PCDH10 [DGVbeta]
DECIPHERPCDH10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDH10 
Mutations
ICGC Data PortalPCDH10 
TCGA Data PortalPCDH10 
Broad Tumor PortalPCDH10
OASIS PortalPCDH10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDH10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDH10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDH10
DgiDB (Drug Gene Interaction Database)PCDH10
DoCM (Curated mutations)PCDH10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDH10 (select a term)
intoGenPCDH10
Cancer3DPCDH10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608286   
Orphanet
MedgenPCDH10
Genetic Testing Registry PCDH10
NextProtQ9P2E7 [Medical]
TSGene57575
GENETestsPCDH10
Target ValidationPCDH10
Huge Navigator PCDH10 [HugePedia]
snp3D : Map Gene to Disease57575
BioCentury BCIQPCDH10
ClinGenPCDH10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57575
Chemical/Pharm GKB GenePA32995
Clinical trialPCDH10
Miscellaneous
canSAR (ICR)PCDH10 (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDH10
EVEXPCDH10
GoPubMedPCDH10
iHOPPCDH10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:10:11 CEST 2017

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