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PCGF1 (polycomb group ring finger 1)

Identity

Alias_symbol (synonym)NSPC1
RNF68
MGC10882
Other alias2010002K04Rik
RNF3A-2
HGNC (Hugo) PCGF1
LocusID (NCBI) 84759
Atlas_Id 43770
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 74505043 and ends at 74507694 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MGEA5 (10q24.32) / PCGF1 (2p13.1)PCGF1 (2p13.1) / C1S (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCGF1   17615
Cards
Entrez_Gene (NCBI)PCGF1  84759  polycomb group ring finger 1
Aliases2010002K04Rik; NSPC1; RNF3A-2; RNF68
GeneCards (Weizmann)PCGF1
Ensembl hg19 (Hinxton)ENSG00000115289 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115289 [Gene_View]  chr2:74505043-74507694 [Contig_View]  PCGF1 [Vega]
ICGC DataPortalENSG00000115289
TCGA cBioPortalPCGF1
AceView (NCBI)PCGF1
Genatlas (Paris)PCGF1
WikiGenes84759
SOURCE (Princeton)PCGF1
Genetics Home Reference (NIH)PCGF1
Genomic and cartography
GoldenPath hg38 (UCSC)PCGF1  -     chr2:74505043-74507694 -  2p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCGF1  -     2p13.1   [Description]    (hg19-Feb_2009)
EnsemblPCGF1 - 2p13.1 [CytoView hg19]  PCGF1 - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBIPCGF1 [Mapview hg19]  PCGF1 [Mapview hg38]
OMIM610231   
Gene and transcription
Genbank (Entrez)AF087884 AK125742 AL049296 BC004952 BU602498
RefSeq transcript (Entrez)NM_032673
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCGF1
Cluster EST : UnigeneHs.316750 [ NCBI ]
CGAP (NCI)Hs.316750
Alternative Splicing GalleryENSG00000115289
Gene ExpressionPCGF1 [ NCBI-GEO ]   PCGF1 [ EBI - ARRAY_EXPRESS ]   PCGF1 [ SEEK ]   PCGF1 [ MEM ]
Gene Expression Viewer (FireBrowse)PCGF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84759
GTEX Portal (Tissue expression)PCGF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSM1
Splice isoforms : SwissVarQ9BSM1
PhosPhoSitePlusQ9BSM1
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)RAWUL    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)RAWUL (PF16207)   
Domain families : Pfam (NCBI)pfam16207   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)PCGF1
DMDM Disease mutations84759
Blocks (Seattle)PCGF1
PDB (SRS)4HPL    4HPM    5JH5   
PDB (PDBSum)4HPL    4HPM    5JH5   
PDB (IMB)4HPL    4HPM    5JH5   
PDB (RSDB)4HPL    4HPM    5JH5   
Structural Biology KnowledgeBase4HPL    4HPM    5JH5   
SCOP (Structural Classification of Proteins)4HPL    4HPM    5JH5   
CATH (Classification of proteins structures)4HPL    4HPM    5JH5   
SuperfamilyQ9BSM1
Human Protein AtlasENSG00000115289
Peptide AtlasQ9BSM1
HPRD11404
IPIIPI00902987   IPI00921560   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSM1
IntAct (EBI)Q9BSM1
FunCoupENSG00000115289
BioGRIDPCGF1
STRING (EMBL)PCGF1
ZODIACPCGF1
Ontologies - Pathways
QuickGOQ9BSM1
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  protein C-terminus binding  zinc ion binding  PcG protein complex  histone H2A monoubiquitination  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  protein C-terminus binding  zinc ion binding  PcG protein complex  histone H2A monoubiquitination  
NDEx NetworkPCGF1
Atlas of Cancer Signalling NetworkPCGF1
Wikipedia pathwaysPCGF1
Orthology - Evolution
OrthoDB84759
GeneTree (enSembl)ENSG00000115289
Phylogenetic Trees/Animal Genes : TreeFamPCGF1
HOVERGENQ9BSM1
HOGENOMQ9BSM1
Homologs : HomoloGenePCGF1
Homology/Alignments : Family Browser (UCSC)PCGF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCGF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCGF1
dbVarPCGF1
ClinVarPCGF1
1000_GenomesPCGF1 
Exome Variant ServerPCGF1
ExAC (Exome Aggregation Consortium)PCGF1 (select the gene name)
Genetic variants : HAPMAP84759
Genomic Variants (DGV)PCGF1 [DGVbeta]
DECIPHERPCGF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCGF1 
Mutations
ICGC Data PortalPCGF1 
TCGA Data PortalPCGF1 
Broad Tumor PortalPCGF1
OASIS PortalPCGF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCGF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCGF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCGF1
DgiDB (Drug Gene Interaction Database)PCGF1
DoCM (Curated mutations)PCGF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCGF1 (select a term)
intoGenPCGF1
Cancer3DPCGF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610231   
Orphanet
MedgenPCGF1
Genetic Testing Registry PCGF1
NextProtQ9BSM1 [Medical]
TSGene84759
GENETestsPCGF1
Target ValidationPCGF1
Huge Navigator PCGF1 [HugePedia]
snp3D : Map Gene to Disease84759
BioCentury BCIQPCGF1
ClinGenPCGF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84759
Chemical/Pharm GKB GenePA134976631
Clinical trialPCGF1
Miscellaneous
canSAR (ICR)PCGF1 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCGF1
EVEXPCGF1
GoPubMedPCGF1
iHOPPCGF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:02:50 CEST 2017

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