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PDE4D (phosphodiesterase 4D)

Identity

Alias (NCBI)ACRDYS2
DPDE3
HSPDE4D
PDE43
PDE4DN2
STRK1
HGNC (Hugo) PDE4D
HGNC Alias namephosphodiesterase E3 dunce homolog (Drosophila)
 cAMP-specific 3',5'-cyclic phosphodiesterase 4D
HGNC Previous nameDPDE3
HGNC Previous namephosphodiesterase 4D, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E3)
 phosphodiesterase 4D, cAMP-specific
LocusID (NCBI) 5144
Atlas_Id 43832
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 58969041 and ends at 59586498 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DEPDC1B (5q12.1) / PDE4D (5q11.2)PDE4D (5q11.2) / AGPAT4 (6q26)PDE4D (5q11.2) / C5orf47 (5q35.2)
PDE4D (5q11.2) / CRABP1 (15q25.1)PDE4D (5q11.2) / DEPDC1B (5q12.1)PDE4D (5q11.2) / ELOVL7 (5q12.1)
PDE4D (5q11.2) / ERCC8 (5q12.1)PDE4D (5q11.2) / INTS10 (8p21.3)PDE4D (5q11.2) / KCTD2 (17q25.1)
PDE4D (5q11.2) / KIAA1217 (10p12.2)PDE4D (5q11.2) / MCTP1 (5q15)PDE4D (5q11.2) / PDE4D (5q11.2)
PDE4D (5q11.2) / PLPP1 (5q11.2)PDE4D (5q11.2) / RAB24 (5q35.3)PDE4D (5q11.2) / RGS7BP (5q12.3)
PDE4D (5q11.2) / RP11-325I22.2 ()PDE4D (5q11.2) / SLC16A9 (10q21.2)RAB37 (17q25.1) / PDE4D (5q11.2)
REPS1 (6q24.1) / PDE4D (5q11.2)TAB2 (6q25.1) / PDE4D (5q11.2)PDE4D 5q11.2 / CRABP1 15q25.1
PDE4D 5q11.2 / DEPDC1B 5q12.1PDE4D 5q11.2 / ELOVL7 5q12.1PDE4D 5q11.2 / ERCC8 5q12.1
PDE4D 5q11.2 / INTS10 8p21.3PDE4D 5q11.2 / MCTP1 5q15PDE4D 5q11.2 / PPAP2A 5q11.2
PDE4D 5q11.2 / RAB24 5q35.3PDE4D 5q11.2 / RGS7BP 5q12.3PDE4D 5q11.2 RP11-325I22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PDE4D   8783
Cards
Entrez_Gene (NCBI)PDE4D    phosphodiesterase 4D
AliasesACRDYS2; DPDE3; HSPDE4D; PDE43; 
PDE4DN2; STRK1
GeneCards (Weizmann)PDE4D
Ensembl hg19 (Hinxton)ENSG00000113448 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113448 [Gene_View]  ENSG00000113448 [Sequence]  chr5:58969041-59586498 [Contig_View]  PDE4D [Vega]
ICGC DataPortalENSG00000113448
TCGA cBioPortalPDE4D
AceView (NCBI)PDE4D
Genatlas (Paris)PDE4D
SOURCE (Princeton)PDE4D
Genetics Home Reference (NIH)PDE4D
Genomic and cartography
GoldenPath hg38 (UCSC)PDE4D  -     chr5:58969041-59586498 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PDE4D  -     5q11.2   [Description]    (hg19-Feb_2009)
GoldenPathPDE4D - 5q11.2 [CytoView hg19]  PDE4D - 5q11.2 [CytoView hg38]
ImmunoBaseENSG00000113448
Genome Data Viewer NCBIPDE4D [Mapview hg19]  
OMIM600129   614613   
Gene and transcription
Genbank (Entrez)AF012073 AF012074 AF536975 AF536976 AF536977
RefSeq transcript (Entrez)NM_001104631 NM_001165899 NM_001197218 NM_001197219 NM_001197220 NM_001197221 NM_001197222 NM_001197223 NM_001349241 NM_001349242 NM_001349243 NM_001364599 NM_001364600 NM_001364601 NM_001364602 NM_001364603 NM_001364604 NM_006203
Consensus coding sequences : CCDS (NCBI)PDE4D
Gene ExpressionPDE4D [ NCBI-GEO ]   PDE4D [ EBI - ARRAY_EXPRESS ]   PDE4D [ SEEK ]   PDE4D [ MEM ]
Gene Expression Viewer (FireBrowse)PDE4D [ Firebrowse - Broad ]
GenevisibleExpression of PDE4D in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5144
GTEX Portal (Tissue expression)PDE4D
Human Protein AtlasENSG00000113448-PDE4D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PDE4D
Human Protein Atlas [tissue]ENSG00000113448-PDE4D [tissue]
HPRD02530
Protein Interaction databases
BioGRIDPDE4D
STRING (EMBL)PDE4D
ZODIACPDE4D
Ontologies - Pathways
Litterature
PubMed232 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPDE4D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:24:44 CEST 2021

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