Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PGRMC1 (progesterone receptor membrane component 1)

Identity

Alias_symbol (synonym)HPR6.6
Other aliasMPR
HGNC (Hugo) PGRMC1
LocusID (NCBI) 10857
Atlas_Id 45676
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 118370208 and ends at 118378429 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PGRMC1 (Xq24) / PGRMC1 (Xq24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PGRMC1   16090
Cards
Entrez_Gene (NCBI)PGRMC1  10857  progesterone receptor membrane component 1
AliasesHPR6.6; MPR
GeneCards (Weizmann)PGRMC1
Ensembl hg19 (Hinxton)ENSG00000101856 [Gene_View]  chrX:118370208-118378429 [Contig_View]  PGRMC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101856 [Gene_View]  chrX:118370208-118378429 [Contig_View]  PGRMC1 [Vega]
ICGC DataPortalENSG00000101856
TCGA cBioPortalPGRMC1
AceView (NCBI)PGRMC1
Genatlas (Paris)PGRMC1
WikiGenes10857
SOURCE (Princeton)PGRMC1
Genetics Home Reference (NIH)PGRMC1
Genomic and cartography
GoldenPath hg19 (UCSC)PGRMC1  -     chrX:118370208-118378429 +  Xq24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PGRMC1  -     Xq24   [Description]    (hg38-Dec_2013)
EnsemblPGRMC1 - Xq24 [CytoView hg19]  PGRMC1 - Xq24 [CytoView hg38]
Mapping of homologs : NCBIPGRMC1 [Mapview hg19]  PGRMC1 [Mapview hg38]
OMIM300435   
Gene and transcription
Genbank (Entrez)AK293618 AK313956 BC034238 CR456993 CX762728
RefSeq transcript (Entrez)NM_001282621 NM_006667
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016756 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)PGRMC1
Cluster EST : UnigeneHs.90061 [ NCBI ]
CGAP (NCI)Hs.90061
Alternative Splicing GalleryENSG00000101856
Gene ExpressionPGRMC1 [ NCBI-GEO ]   PGRMC1 [ EBI - ARRAY_EXPRESS ]   PGRMC1 [ SEEK ]   PGRMC1 [ MEM ]
Gene Expression Viewer (FireBrowse)PGRMC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10857
GTEX Portal (Tissue expression)PGRMC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00264   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00264  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00264
Splice isoforms : SwissVarO00264
PhosPhoSitePlusO00264
Domains : Interpro (EBI)Cyt_B5-like_heme/steroid-bd   
Domain families : Pfam (Sanger)Cyt-b5 (PF00173)   
Domain families : Pfam (NCBI)pfam00173   
Conserved Domain (NCBI)PGRMC1
DMDM Disease mutations10857
Blocks (Seattle)PGRMC1
SuperfamilyO00264
Human Protein AtlasENSG00000101856
Peptide AtlasO00264
HPRD02338
IPIIPI00220739   IPI00922847   
Protein Interaction databases
DIP (DOE-UCLA)O00264
IntAct (EBI)O00264
FunCoupENSG00000101856
BioGRIDPGRMC1
STRING (EMBL)PGRMC1
ZODIACPGRMC1
Ontologies - Pathways
QuickGOO00264
Ontology : AmiGOsteroid binding  protein binding  nucleolus  endoplasmic reticulum  endoplasmic reticulum membrane  endomembrane system  membrane  membrane  integral component of membrane  heme binding  extracellular exosome  
Ontology : EGO-EBIsteroid binding  protein binding  nucleolus  endoplasmic reticulum  endoplasmic reticulum membrane  endomembrane system  membrane  membrane  integral component of membrane  heme binding  extracellular exosome  
NDEx NetworkPGRMC1
Atlas of Cancer Signalling NetworkPGRMC1
Wikipedia pathwaysPGRMC1
Orthology - Evolution
OrthoDB10857
GeneTree (enSembl)ENSG00000101856
Phylogenetic Trees/Animal Genes : TreeFamPGRMC1
HOVERGENO00264
HOGENOMO00264
Homologs : HomoloGenePGRMC1
Homology/Alignments : Family Browser (UCSC)PGRMC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPGRMC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PGRMC1
dbVarPGRMC1
ClinVarPGRMC1
1000_GenomesPGRMC1 
Exome Variant ServerPGRMC1
ExAC (Exome Aggregation Consortium)PGRMC1 (select the gene name)
Genetic variants : HAPMAP10857
Genomic Variants (DGV)PGRMC1 [DGVbeta]
DECIPHER (Syndromes)X:118370208-118378429  ENSG00000101856
CONAN: Copy Number AnalysisPGRMC1 
Mutations
ICGC Data PortalPGRMC1 
TCGA Data PortalPGRMC1 
Broad Tumor PortalPGRMC1
OASIS PortalPGRMC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPGRMC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPGRMC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PGRMC1
DgiDB (Drug Gene Interaction Database)PGRMC1
DoCM (Curated mutations)PGRMC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PGRMC1 (select a term)
intoGenPGRMC1
Cancer3DPGRMC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300435   
Orphanet
MedgenPGRMC1
Genetic Testing Registry PGRMC1
NextProtO00264 [Medical]
TSGene10857
GENETestsPGRMC1
Huge Navigator PGRMC1 [HugePedia]
snp3D : Map Gene to Disease10857
BioCentury BCIQPGRMC1
ClinGenPGRMC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10857
Chemical/Pharm GKB GenePA33248
Clinical trialPGRMC1
Miscellaneous
canSAR (ICR)PGRMC1 (select the gene name)
Probes
Litterature
PubMed71 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePGRMC1
EVEXPGRMC1
GoPubMedPGRMC1
iHOPPGRMC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:14:10 CEST 2017

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