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PPP6C (protein phosphatase 6, catalytic subunit)

Identity

Other namesPP6
PP6C
HGNC (Hugo) PPP6C
LocusID (NCBI) 5537
Location 9q33.3
Location_base_pair Starts at 127908852 and ends at 127952218 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PPP6C   9323
Cards
Entrez_Gene (NCBI)PPP6C  5537  protein phosphatase 6, catalytic subunit
GeneCards (Weizmann)PPP6C
Ensembl (Hinxton)ENSG00000119414 [Gene_View]  chr9:127908852-127952218 [Contig_View]  PPP6C [Vega]
ICGC DataPortalENSG00000119414
AceView (NCBI)PPP6C
Genatlas (Paris)PPP6C
WikiGenes5537
SOURCE (Princeton)NM_001123355 NM_001123369 NM_002721
Genomic and cartography
GoldenPath (UCSC)PPP6C  -  9q33.3   chr9:127908852-127952218 -  9q33.3   [Description]    (hg19-Feb_2009)
EnsemblPPP6C - 9q33.3 [CytoView]
Mapping of homologs : NCBIPPP6C [Mapview]
OMIM612725   
Gene and transcription
Genbank (Entrez)AA251321 AF035158 AK295190 AK295752 AK299087
RefSeq transcript (Entrez)NM_001123355 NM_001123369 NM_002721
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NT_008470 NW_001839239 NW_004929366
Consensus coding sequences : CCDS (NCBI)PPP6C
Cluster EST : UnigeneHs.744091 [ NCBI ]
CGAP (NCI)Hs.744091
Alternative Splicing : Fast-db (Paris)GSHG0031156
Alternative Splicing GalleryENSG00000119414
Gene ExpressionPPP6C [ NCBI-GEO ]     PPP6C [ SEEK ]   PPP6C [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00743 (Uniprot)
NextProtO00743  [Medical]
With graphics : InterProO00743
Splice isoforms : SwissVarO00743 (Swissvar)
Catalytic activity : Enzyme3.1.3.16 [ Enzyme-Expasy ]   3.1.3.163.1.3.16 [ IntEnz-EBI ]   3.1.3.16 [ BRENDA ]   3.1.3.16 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)SER_THR_PHOSPHATASE (PS00125)   
Domains : Interpro (EBI)Calcineurin-like_PHP_apaH    Metallo-depent_PP-like    Ser/Thr-sp_prot-phosphatase   
Related proteins : CluSTrO00743
Domain families : Pfam (Sanger)Metallophos (PF00149)   
Domain families : Pfam (NCBI)pfam00149   
Domain families : Smart (EMBL)PP2Ac (SM00156)  
DMDM Disease mutations5537
Blocks (Seattle)O00743
Human Protein AtlasENSG00000119414
Peptide AtlasO00743
HPRD02141
IPIIPI00012970   IPI00890827   IPI00890743   IPI01012187   IPI00514237   
Protein Interaction databases
DIP (DOE-UCLA)O00743
IntAct (EBI)O00743
FunCoupENSG00000119414
BioGRIDPPP6C
InParanoidO00743
Interologous Interaction database O00743
IntegromeDBPPP6C
STRING (EMBL)PPP6C
Ontologies - Pathways
Ontology : AmiGOG1/S transition of mitotic cell cycle  protein serine/threonine phosphatase activity  protein binding  cytosol  protein dephosphorylation  metal ion binding  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  protein serine/threonine phosphatase activity  protein binding  cytosol  protein dephosphorylation  metal ion binding  
Protein Interaction DatabasePPP6C
Wikipedia pathwaysPPP6C
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PPP6C
SNP (GeneSNP Utah)PPP6C
SNP : HGBasePPP6C
Genetic variants : HAPMAPPPP6C
1000_GenomesPPP6C 
ICGC programENSG00000119414 
CONAN: Copy Number AnalysisPPP6C 
Somatic Mutations in Cancer : COSMICPPP6C 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDPPP6C
OMIM612725   
MedgenPPP6C
GENETestsPPP6C
Disease Genetic AssociationPPP6C
Huge Navigator PPP6C [HugePedia]  PPP6C [HugeCancerGEM]
Genomic VariantsPPP6C  PPP6C [DGVbeta]
Exome VariantPPP6C
dbVarPPP6C
ClinVarPPP6C
snp3D : Map Gene to Disease5537
General knowledge
Homologs : HomoloGenePPP6C
Homology/Alignments : Family Browser (UCSC)PPP6C
Phylogenetic Trees/Animal Genes : TreeFamPPP6C
Chemical/Protein Interactions : CTD5537
Chemical/Pharm GKB GenePA33687
Clinical trialPPP6C
Cancer Resource (Charite)ENSG00000119414
Other databases
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
CoreMinePPP6C
iHOPPPP6C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:10:05 CEST 2014

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