Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PPP6C (protein phosphatase 6, catalytic subunit)

Identity

Other namesPP6
PP6C
HGNC (Hugo) PPP6C
LocusID (NCBI) 5537
Location 9q33.3
Location_base_pair Starts at 127908852 and ends at 127952218 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PPP6C   9323
Entrez_Gene (NCBI)PPP6C  5537  protein phosphatase 6, catalytic subunit
Cards
GeneCards (Weizmann)PPP6C
Ensembl (Hinxton)ENSG00000119414 [Gene_View]  chr9:127908852-127952218 [Contig_View]  PPP6C [Vega]
AceView (NCBI)PPP6C
Genatlas (Paris)PPP6C
SOURCE (Stanford)NM_001123355 NM_001123369 NM_002721
Genomic and cartography
GoldenPath (UCSC)PPP6C  -  9q33.3   chr9:127908852-127952218 -  9q33.3   [Description]    (hg19-Feb_2009)
EnsemblPPP6C - 9q33.3 [CytoView]
Mapping of homologs : NCBIPPP6C [Mapview]
OMIM612725   
Gene and transcription
Genbank (Entrez)AA251321 AF035158 AK295190 AK295752 AK299087
RefSeq transcript (SRS)NM_001123355 NM_001123369 NM_002721
RefSeq transcript (Entrez)NM_001123355 NM_001123369 NM_002721
RefSeq genomic (SRS)AC_000141 NC_000009 NC_018920 NT_008470 NW_001839239 NW_004078058
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NT_008470 NW_001839239 NW_004078058
Consensus coding sequences : CCDS (NCBI)PPP6C
Cluster EST : UnigeneHs.744091 [ SRS ] Hs.744091 [ NCBI ]
CGAP (NCI)Hs.744091
Alternative Splicing : Fast-db (Paris)GSHG0031156
Alternative Splicing GalleryENSG00000119414
Gene ExpressionPPP6C [ NCBI-GEO ]   PPP6C [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00743 (SRS) O00743 (Uniprot)
NextProtO00743
With graphics : InterProO00743
Splice isoforms : SwissVarO00743(Swissvar)
Domaine pattern : Prosite (SRS)SER_THR_PHOSPHATASE (PS00125)   
Domaine pattern : Prosite (Expaxy)SER_THR_PHOSPHATASE (PS00125)   
Domains : Interpro (SRS)Metallo_PEstase_dom    Ser/Thr-sp_prot-phosphatase   
Domains : Interpro (EBI)Metallo_PEstase_dom    Ser/Thr-sp_prot-phosphatase   
Related proteins : CluSTrO00743
Domain families : Pfam (SRS)Metallophos (PF00149)   
Domain families : Pfam (Sanger)Metallophos (PF00149)   
Domain families : Pfam (NCBI)pfam00149   
Domain families : Smart (EMBL)PP2Ac (SM00156)  
DMDM5537
Blocks (Seattle)O00743
Human Protein AtlasENSG00000119414
HPRD02141
IPIIPI00012970   IPI00890827   IPI00890743   IPI01012187   IPI00514237   
Protein Interaction databases
DIP (DOE-UCLA)O00743
IntAct (EBI)O00743
FunCoupENSG00000119414
REACTOMEPPP6C
Protein Interaction Database5537
BioGRIDPPP6C
InParanoidO00743
Interologous Interaction database O00743
IntegromeDBPPP6C
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PPP6C
SNP (GeneSNP Utah)PPP6C
SNP : HGBasePPP6C
Genetic variants : HAPMAPPPP6C
Somatic Mutations in Cancer : COSMICPPP6C 
CONAN: Copy Number AnalysisPPP6C 
Mutations and Diseases : HGMDPPP6C
OMIM612725   
GENETests612725   
Disease Genetic AssociationPPP6C
Huge Navigator PPP6C [HugePedia]  PPP6C [HugeCancerGEM]
Genomic VariantsPPP6C  PPP6C [DGVbeta]
ClinVarPPP6C
snp3D : Map Gene to Disease5537
General knowledge
Homologs : HomoloGenePPP6C
Homology/Alignments : Family Browser (UCSC)PPP6C
Phylogenetic Trees/Animal Genes : TreeFamPPP6C
Chemical/Protein Interactions : CTD5537
Chemical/Pharm GKB GenePA33687
Clinical trialPPP6C
Cancer Resource (Charite)ENSG00000119414
Ontology : AmiGOG1/S transition of mitotic cell cycle  protein serine/threonine phosphatase activity  protein binding  cytosol  protein dephosphorylation  metal ion binding  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  protein serine/threonine phosphatase activity  protein binding  cytosol  protein dephosphorylation  metal ion binding  
Other databases
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
PubGenePPP6C
iHOPPPP6C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:39:53 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.