Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PRUNE2 (prune homolog 2 with BCH domain)

Identity

Alias (NCBI)BMCC1
BNIPXL
C9orf65
KIAA0367
HGNC (Hugo) PRUNE2
HGNC Alias symbBMCC1
BNIPXL
A214N16.3
bA214N16.3
HGNC Alias nameolfaxin
HGNC Previous nameC9orf65
 KIAA0367
HGNC Previous namechromosome 9 open reading frame 65
 KIAA0367
 prune homolog 2 (Drosophila)
 prune homolog 2
LocusID (NCBI) 158471
Atlas_Id 43690
Location 9q21.2  [Link to chromosome band 9q21]
Location_base_pair Starts at 76611376 and ends at 76906114 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRUNE2 (9q21.2) / GNAQ (9q21.2)PRUNE2 (9q21.2) / TOR1AIP1 (1q25.2)PRUNE2 9q21.2 / GNAQ 9q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PRUNE2   25209
Cards
Entrez_Gene (NCBI)PRUNE2    prune homolog 2 with BCH domain
AliasesBMCC1; BNIPXL; C9orf65; KIAA0367
GeneCards (Weizmann)PRUNE2
Ensembl hg19 (Hinxton)ENSG00000106772 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106772 [Gene_View]  ENSG00000106772 [Sequence]  chr9:76611376-76906114 [Contig_View]  PRUNE2 [Vega]
ICGC DataPortalENSG00000106772
TCGA cBioPortalPRUNE2
AceView (NCBI)PRUNE2
Genatlas (Paris)PRUNE2
SOURCE (Princeton)PRUNE2
Genetics Home Reference (NIH)PRUNE2
Genomic and cartography
GoldenPath hg38 (UCSC)PRUNE2  -     chr9:76611376-76906114 -  9q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRUNE2  -     9q21.2   [Description]    (hg19-Feb_2009)
GoldenPathPRUNE2 - 9q21.2 [CytoView hg19]  PRUNE2 - 9q21.2 [CytoView hg38]
ImmunoBaseENSG00000106772
genome Data Viewer NCBIPRUNE2 [Mapview hg19]  
OMIM610691   
Gene and transcription
Genbank (Entrez)AB002365 AB050197 AB535152 AK296269 AK298805
RefSeq transcript (Entrez)NM_001308047 NM_001308048 NM_001308049 NM_001308050 NM_001308051 NM_001330680 NM_015225 NM_138818
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRUNE2
Alternative Splicing GalleryENSG00000106772
Gene ExpressionPRUNE2 [ NCBI-GEO ]   PRUNE2 [ EBI - ARRAY_EXPRESS ]   PRUNE2 [ SEEK ]   PRUNE2 [ MEM ]
Gene Expression Viewer (FireBrowse)PRUNE2 [ Firebrowse - Broad ]
GenevisibleExpression of PRUNE2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158471
GTEX Portal (Tissue expression)PRUNE2
Human Protein AtlasENSG00000106772-PRUNE2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRUNE2
Blocks (Seattle)PRUNE2
Human Protein Atlas [tissue]ENSG00000106772-PRUNE2 [tissue]
HPRD12970
IPIIPI00853158   IPI00967031   IPI00966736   IPI00888914   IPI00941707   IPI00828096   IPI00939382   IPI01008814   IPI00641533   IPI00607780   
Protein Interaction databases
BioGRIDPRUNE2
STRING (EMBL)PRUNE2
ZODIACPRUNE2
Ontologies - Pathways
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPRUNE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 25 19:41:20 CET 2021

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