Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PRUNE2 (prune homolog 2 with BCH domain)

Identity

Alias (NCBI)BMCC1
BNIPXL
C9orf65
KIAA0367
HGNC (Hugo) PRUNE2
HGNC Alias symbBMCC1
BNIPXL
A214N16.3
bA214N16.3
HGNC Alias nameolfaxin
HGNC Previous nameC9orf65
 KIAA0367
HGNC Previous namechromosome 9 open reading frame 65
 KIAA0367
 prune homolog 2 (Drosophila)
 prune homolog 2
LocusID (NCBI) 158471
Atlas_Id 43690
Location 9q21.2  [Link to chromosome band 9q21]
Location_base_pair Starts at 76611376 and ends at 76906114 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRUNE2 (9q21.2) / GNAQ (9q21.2)PRUNE2 (9q21.2) / TOR1AIP1 (1q25.2)PRUNE2 9q21.2 / GNAQ 9q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PRUNE2   25209
Cards
Entrez_Gene (NCBI)PRUNE2    prune homolog 2 with BCH domain
AliasesBMCC1; BNIPXL; C9orf65; KIAA0367
GeneCards (Weizmann)PRUNE2
Ensembl hg19 (Hinxton)ENSG00000106772 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106772 [Gene_View]  ENSG00000106772 [Sequence]  chr9:76611376-76906114 [Contig_View]  PRUNE2 [Vega]
ICGC DataPortalENSG00000106772
TCGA cBioPortalPRUNE2
AceView (NCBI)PRUNE2
Genatlas (Paris)PRUNE2
SOURCE (Princeton)PRUNE2
Genetics Home Reference (NIH)PRUNE2
Genomic and cartography
GoldenPath hg38 (UCSC)PRUNE2  -     chr9:76611376-76906114 -  9q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PRUNE2  -     9q21.2   [Description]    (hg19-Feb_2009)
GoldenPathPRUNE2 - 9q21.2 [CytoView hg19]  PRUNE2 - 9q21.2 [CytoView hg38]
ImmunoBaseENSG00000106772
genome Data Viewer NCBIPRUNE2 [Mapview hg19]  
OMIM610691   
Gene and transcription
Genbank (Entrez)AB002365 AB050197 AB535152 AK296269 AK298805
RefSeq transcript (Entrez)NM_001308047 NM_001308048 NM_001308049 NM_001308050 NM_001308051 NM_001330680 NM_015225 NM_138818
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PRUNE2
Alternative Splicing GalleryENSG00000106772
Gene ExpressionPRUNE2 [ NCBI-GEO ]   PRUNE2 [ EBI - ARRAY_EXPRESS ]   PRUNE2 [ SEEK ]   PRUNE2 [ MEM ]
Gene Expression Viewer (FireBrowse)PRUNE2 [ Firebrowse - Broad ]
GenevisibleExpression of PRUNE2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158471
GTEX Portal (Tissue expression)PRUNE2
Human Protein AtlasENSG00000106772-PRUNE2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PRUNE2
Blocks (Seattle)PRUNE2
Human Protein Atlas [tissue]ENSG00000106772-PRUNE2 [tissue]
HPRD12970
IPIIPI00853158   IPI00967031   IPI00966736   IPI00888914   IPI00941707   IPI00828096   IPI00939382   IPI01008814   IPI00641533   IPI00607780   
Protein Interaction databases
BioGRIDPRUNE2
STRING (EMBL)PRUNE2
ZODIACPRUNE2
Ontologies - Pathways
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPRUNE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:41:20 CET 2021
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