Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PTGFR (prostaglandin F receptor)

Identity

Alias_namesprostaglandin F receptor (FP)
Alias_symbol (synonym)FP
Other alias
HGNC (Hugo) PTGFR
LocusID (NCBI) 5737
Atlas_Id 43835
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 78956728 and ends at 79006386 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTGFR   9600
Cards
Entrez_Gene (NCBI)PTGFR  5737  prostaglandin F receptor
AliasesFP
GeneCards (Weizmann)PTGFR
Ensembl hg19 (Hinxton)ENSG00000122420 [Gene_View]  chr1:78956728-79006386 [Contig_View]  PTGFR [Vega]
Ensembl hg38 (Hinxton)ENSG00000122420 [Gene_View]  chr1:78956728-79006386 [Contig_View]  PTGFR [Vega]
ICGC DataPortalENSG00000122420
TCGA cBioPortalPTGFR
AceView (NCBI)PTGFR
Genatlas (Paris)PTGFR
WikiGenes5737
SOURCE (Princeton)PTGFR
Genetics Home Reference (NIH)PTGFR
Genomic and cartography
GoldenPath hg19 (UCSC)PTGFR  -     chr1:78956728-79006386 +  1p31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PTGFR  -     1p31.1   [Description]    (hg38-Dec_2013)
EnsemblPTGFR - 1p31.1 [CytoView hg19]  PTGFR - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIPTGFR [Mapview hg19]  PTGFR [Mapview hg38]
OMIM600563   
Gene and transcription
Genbank (Entrez)AF004021 AK292845 AK312816 AY337000 AY485530
RefSeq transcript (Entrez)NM_000959 NM_001039585
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)PTGFR
Cluster EST : UnigeneHs.654365 [ NCBI ]
CGAP (NCI)Hs.654365
Alternative Splicing GalleryENSG00000122420
Gene ExpressionPTGFR [ NCBI-GEO ]   PTGFR [ EBI - ARRAY_EXPRESS ]   PTGFR [ SEEK ]   PTGFR [ MEM ]
Gene Expression Viewer (FireBrowse)PTGFR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5737
GTEX Portal (Tissue expression)PTGFR
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43088   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43088  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43088
Splice isoforms : SwissVarP43088
PhosPhoSitePlusP43088
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    PglndnF_rcpt    Prostanoid_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)PTGFR
DMDM Disease mutations5737
Blocks (Seattle)PTGFR
SuperfamilyP43088
Human Protein AtlasENSG00000122420
Peptide AtlasP43088
HPRD08988
IPIIPI00015730   IPI00646892   IPI00981479   
Protein Interaction databases
DIP (DOE-UCLA)P43088
IntAct (EBI)P43088
FunCoupENSG00000122420
BioGRIDPTGFR
STRING (EMBL)PTGFR
ZODIACPTGFR
Ontologies - Pathways
QuickGOP43088
Ontology : AmiGOprostaglandin F receptor activity  extracellular region  cytoplasm  plasma membrane  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  parturition  positive regulation of cell proliferation  positive regulation of gene expression  response to estradiol  response to lipopolysaccharide  calcium-mediated signaling using intracellular calcium source  negative regulation of apoptotic process  cellular response to prostaglandin D stimulus  
Ontology : EGO-EBIprostaglandin F receptor activity  extracellular region  cytoplasm  plasma membrane  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  parturition  positive regulation of cell proliferation  positive regulation of gene expression  response to estradiol  response to lipopolysaccharide  calcium-mediated signaling using intracellular calcium source  negative regulation of apoptotic process  cellular response to prostaglandin D stimulus  
Pathways : BIOCARTAEicosanoid Metabolism [Genes]   
Pathways : KEGGCalcium signaling pathway    Neuroactive ligand-receptor interaction   
NDEx NetworkPTGFR
Atlas of Cancer Signalling NetworkPTGFR
Wikipedia pathwaysPTGFR
Orthology - Evolution
OrthoDB5737
GeneTree (enSembl)ENSG00000122420
Phylogenetic Trees/Animal Genes : TreeFamPTGFR
HOVERGENP43088
HOGENOMP43088
Homologs : HomoloGenePTGFR
Homology/Alignments : Family Browser (UCSC)PTGFR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTGFR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTGFR
dbVarPTGFR
ClinVarPTGFR
1000_GenomesPTGFR 
Exome Variant ServerPTGFR
ExAC (Exome Aggregation Consortium)PTGFR (select the gene name)
Genetic variants : HAPMAP5737
Genomic Variants (DGV)PTGFR [DGVbeta]
DECIPHER (Syndromes)1:78956728-79006386  ENSG00000122420
CONAN: Copy Number AnalysisPTGFR 
Mutations
ICGC Data PortalPTGFR 
TCGA Data PortalPTGFR 
Broad Tumor PortalPTGFR
OASIS PortalPTGFR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTGFR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTGFR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTGFR
DgiDB (Drug Gene Interaction Database)PTGFR
DoCM (Curated mutations)PTGFR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTGFR (select a term)
intoGenPTGFR
Cancer3DPTGFR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600563   
Orphanet
MedgenPTGFR
Genetic Testing Registry PTGFR
NextProtP43088 [Medical]
TSGene5737
GENETestsPTGFR
Huge Navigator PTGFR [HugePedia]
snp3D : Map Gene to Disease5737
BioCentury BCIQPTGFR
ClinGenPTGFR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5737
Chemical/Pharm GKB GenePA290
Clinical trialPTGFR
Miscellaneous
canSAR (ICR)PTGFR (select the gene name)
Probes
Litterature
PubMed68 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTGFR
EVEXPTGFR
GoPubMedPTGFR
iHOPPTGFR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:23:33 CET 2017

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