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RAB25 (RAB25, member RAS oncogene family)

Identity

Alias_symbol (synonym)CATX-8
Other aliasRAB11C
HGNC (Hugo) RAB25
LocusID (NCBI) 57111
Atlas_Id 41970
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156030940 and ends at 156040305 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB25   18238
Cards
Entrez_Gene (NCBI)RAB25  57111  RAB25, member RAS oncogene family
AliasesCATX-8; RAB11C
GeneCards (Weizmann)RAB25
Ensembl hg19 (Hinxton)ENSG00000132698 [Gene_View]  chr1:156030940-156040305 [Contig_View]  RAB25 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132698 [Gene_View]  chr1:156030940-156040305 [Contig_View]  RAB25 [Vega]
ICGC DataPortalENSG00000132698
TCGA cBioPortalRAB25
AceView (NCBI)RAB25
Genatlas (Paris)RAB25
WikiGenes57111
SOURCE (Princeton)RAB25
Genetics Home Reference (NIH)RAB25
Genomic and cartography
GoldenPath hg19 (UCSC)RAB25  -     chr1:156030940-156040305 +  1q22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB25  -     1q22   [Description]    (hg38-Dec_2013)
EnsemblRAB25 - 1q22 [CytoView hg19]  RAB25 - 1q22 [CytoView hg38]
Mapping of homologs : NCBIRAB25 [Mapview hg19]  RAB25 [Mapview hg38]
OMIM612942   
Gene and transcription
Genbank (Entrez)AF083124 AF274025 BC004416 BC009831 BC033322
RefSeq transcript (Entrez)NM_020387
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)RAB25
Cluster EST : UnigeneHs.632469 [ NCBI ]
CGAP (NCI)Hs.632469
Alternative Splicing GalleryENSG00000132698
Gene ExpressionRAB25 [ NCBI-GEO ]   RAB25 [ EBI - ARRAY_EXPRESS ]   RAB25 [ SEEK ]   RAB25 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57111
GTEX Portal (Tissue expression)RAB25
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57735   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57735  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57735
Splice isoforms : SwissVarP57735
PhosPhoSitePlusP57735
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Rab_type   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
Conserved Domain (NCBI)RAB25
DMDM Disease mutations57111
Blocks (Seattle)RAB25
PDB (SRS)2OIL    3TSO   
PDB (PDBSum)2OIL    3TSO   
PDB (IMB)2OIL    3TSO   
PDB (RSDB)2OIL    3TSO   
Structural Biology KnowledgeBase2OIL    3TSO   
SCOP (Structural Classification of Proteins)2OIL    3TSO   
CATH (Classification of proteins structures)2OIL    3TSO   
SuperfamilyP57735
Human Protein AtlasENSG00000132698
Peptide AtlasP57735
HPRD06698
IPIIPI00027993   
Protein Interaction databases
DIP (DOE-UCLA)P57735
IntAct (EBI)P57735
FunCoupENSG00000132698
BioGRIDRAB25
STRING (EMBL)RAB25
ZODIACRAB25
Ontologies - Pathways
QuickGOP57735
Ontology : AmiGOepithelial cell morphogenesis  GTPase activity  protein binding  GTP binding  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  metabolic process  positive regulation of cell proliferation  positive regulation of epithelial cell migration  cytoplasmic, membrane-bounded vesicle  pseudopodium  pseudopodium membrane  pseudopodium organization  cytoplasmic vesicle  myosin V binding  regulation of vesicle-mediated transport  extracellular exosome  
Ontology : EGO-EBIepithelial cell morphogenesis  GTPase activity  protein binding  GTP binding  intracellular protein transport  nucleocytoplasmic transport  small GTPase mediated signal transduction  metabolic process  positive regulation of cell proliferation  positive regulation of epithelial cell migration  cytoplasmic, membrane-bounded vesicle  pseudopodium  pseudopodium membrane  pseudopodium organization  cytoplasmic vesicle  myosin V binding  regulation of vesicle-mediated transport  extracellular exosome  
NDEx NetworkRAB25
Atlas of Cancer Signalling NetworkRAB25
Wikipedia pathwaysRAB25
Orthology - Evolution
OrthoDB57111
GeneTree (enSembl)ENSG00000132698
Phylogenetic Trees/Animal Genes : TreeFamRAB25
HOVERGENP57735
HOGENOMP57735
Homologs : HomoloGeneRAB25
Homology/Alignments : Family Browser (UCSC)RAB25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB25
dbVarRAB25
ClinVarRAB25
1000_GenomesRAB25 
Exome Variant ServerRAB25
ExAC (Exome Aggregation Consortium)RAB25 (select the gene name)
Genetic variants : HAPMAP57111
Genomic Variants (DGV)RAB25 [DGVbeta]
DECIPHER (Syndromes)1:156030940-156040305  ENSG00000132698
CONAN: Copy Number AnalysisRAB25 
Mutations
ICGC Data PortalRAB25 
TCGA Data PortalRAB25 
Broad Tumor PortalRAB25
OASIS PortalRAB25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB25
DgiDB (Drug Gene Interaction Database)RAB25
DoCM (Curated mutations)RAB25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB25 (select a term)
intoGenRAB25
Cancer3DRAB25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612942   
Orphanet
MedgenRAB25
Genetic Testing Registry RAB25
NextProtP57735 [Medical]
TSGene57111
GENETestsRAB25
Huge Navigator RAB25 [HugePedia]
snp3D : Map Gene to Disease57111
BioCentury BCIQRAB25
ClinGenRAB25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57111
Chemical/Pharm GKB GenePA34115
Clinical trialRAB25
Miscellaneous
canSAR (ICR)RAB25 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB25
EVEXRAB25
GoPubMedRAB25
iHOPRAB25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:23:54 CET 2017

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