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RAB43 (RAB43, member RAS oncogene family)

Identity

Alias_symbol (synonym)RAB41
RAB11B
ISY1
Other alias
HGNC (Hugo) RAB43
LocusID (NCBI) 339122
Atlas_Id 41997
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 129087569 and ends at 129122150 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB43   19983
Cards
Entrez_Gene (NCBI)RAB43  339122  RAB43, member RAS oncogene family
AliasesRAB11B; RAB41
GeneCards (Weizmann)RAB43
Ensembl hg19 (Hinxton)ENSG00000172780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172780 [Gene_View]  chr3:129087569-129122150 [Contig_View]  RAB43 [Vega]
ICGC DataPortalENSG00000172780
TCGA cBioPortalRAB43
AceView (NCBI)RAB43
Genatlas (Paris)RAB43
WikiGenes339122
SOURCE (Princeton)RAB43
Genetics Home Reference (NIH)RAB43
Genomic and cartography
GoldenPath hg38 (UCSC)RAB43  -     chr3:129087569-129122150 -  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB43  -     3q21.3   [Description]    (hg19-Feb_2009)
EnsemblRAB43 - 3q21.3 [CytoView hg19]  RAB43 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBIRAB43 [Mapview hg19]  RAB43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128345 AK291014 AY166852 BC062319 BC073812
RefSeq transcript (Entrez)NM_001204883 NM_001204884 NM_001204885 NM_001204886 NM_001204887 NM_001204888 NM_198490
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB43
Cluster EST : UnigeneHs.546542 [ NCBI ]
CGAP (NCI)Hs.546542
Alternative Splicing GalleryENSG00000172780
Gene ExpressionRAB43 [ NCBI-GEO ]   RAB43 [ EBI - ARRAY_EXPRESS ]   RAB43 [ SEEK ]   RAB43 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339122
GTEX Portal (Tissue expression)RAB43
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YS6
Splice isoforms : SwissVarQ86YS6
PhosPhoSitePlusQ86YS6
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB43
DMDM Disease mutations339122
Blocks (Seattle)RAB43
PDB (SRS)2HUP   
PDB (PDBSum)2HUP   
PDB (IMB)2HUP   
PDB (RSDB)2HUP   
Structural Biology KnowledgeBase2HUP   
SCOP (Structural Classification of Proteins)2HUP   
CATH (Classification of proteins structures)2HUP   
SuperfamilyQ86YS6
Human Protein AtlasENSG00000172780
Peptide AtlasQ86YS6
HPRD17947
IPIIPI00329441   IPI01018272   IPI00978563   IPI00789395   IPI01013047   
Protein Interaction databases
DIP (DOE-UCLA)Q86YS6
IntAct (EBI)Q86YS6
FunCoupENSG00000172780
BioGRIDRAB43
STRING (EMBL)RAB43
ZODIACRAB43
Ontologies - Pathways
QuickGOQ86YS6
Ontology : AmiGOGTPase activity  protein binding  GTP binding  endosome  Golgi apparatus  Golgi organization  virion assembly  phagocytic vesicle membrane  trans-Golgi network membrane  retrograde transport, plasma membrane to Golgi  phagocytic vesicle  extracellular exosome  phagosome maturation  toxin transport  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  endosome  Golgi apparatus  Golgi organization  virion assembly  phagocytic vesicle membrane  trans-Golgi network membrane  retrograde transport, plasma membrane to Golgi  phagocytic vesicle  extracellular exosome  phagosome maturation  toxin transport  
NDEx NetworkRAB43
Atlas of Cancer Signalling NetworkRAB43
Wikipedia pathwaysRAB43
Orthology - Evolution
OrthoDB339122
GeneTree (enSembl)ENSG00000172780
Phylogenetic Trees/Animal Genes : TreeFamRAB43
HOVERGENQ86YS6
HOGENOMQ86YS6
Homologs : HomoloGeneRAB43
Homology/Alignments : Family Browser (UCSC)RAB43
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB43
dbVarRAB43
ClinVarRAB43
1000_GenomesRAB43 
Exome Variant ServerRAB43
ExAC (Exome Aggregation Consortium)RAB43 (select the gene name)
Genetic variants : HAPMAP339122
Genomic Variants (DGV)RAB43 [DGVbeta]
DECIPHERRAB43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB43 
Mutations
ICGC Data PortalRAB43 
TCGA Data PortalRAB43 
Broad Tumor PortalRAB43
OASIS PortalRAB43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB43
DgiDB (Drug Gene Interaction Database)RAB43
DoCM (Curated mutations)RAB43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB43 (select a term)
intoGenRAB43
Cancer3DRAB43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRAB43
Genetic Testing Registry RAB43
NextProtQ86YS6 [Medical]
TSGene339122
GENETestsRAB43
Target ValidationRAB43
Huge Navigator RAB43 [HugePedia]
snp3D : Map Gene to Disease339122
BioCentury BCIQRAB43
ClinGenRAB43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339122
Chemical/Pharm GKB GenePA134968262
Clinical trialRAB43
Miscellaneous
canSAR (ICR)RAB43 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB43
EVEXRAB43
GoPubMedRAB43
iHOPRAB43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:52:13 CEST 2017

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