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RAD23A (RAD23 homolog A, nucleotide excision repair protein)

Identity

Alias_namesyeast homolog
A
Alias_symbol (synonym)HHR23A
MGC111083
Other aliasHR23A
HGNC (Hugo) RAD23A
LocusID (NCBI) 5886
Atlas_Id 42027
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 12945814 and ends at 12953643 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FGFR1 (8p11.23) / RAD23A (19p13.2)HNRNPAB (5q35.3) / RAD23A (19p13.2)RAD23A (19p13.2) / ARF3 (12q13.12)
RAD23A (19p13.2) / H19 (11p15.5)RENBP (Xq28) / RAD23A (19p13.2)VWF (12p13.31) / RAD23A (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAD23A   9812
Cards
Entrez_Gene (NCBI)RAD23A  5886  RAD23 homolog A, nucleotide excision repair protein
AliasesHHR23A; HR23A
GeneCards (Weizmann)RAD23A
Ensembl hg19 (Hinxton)ENSG00000179262 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179262 [Gene_View]  chr19:12945814-12953643 [Contig_View]  RAD23A [Vega]
ICGC DataPortalENSG00000179262
TCGA cBioPortalRAD23A
AceView (NCBI)RAD23A
Genatlas (Paris)RAD23A
WikiGenes5886
SOURCE (Princeton)RAD23A
Genetics Home Reference (NIH)RAD23A
Genomic and cartography
GoldenPath hg38 (UCSC)RAD23A  -     chr19:12945814-12953643 +  19p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAD23A  -     19p13.13   [Description]    (hg19-Feb_2009)
EnsemblRAD23A - 19p13.13 [CytoView hg19]  RAD23A - 19p13.13 [CytoView hg38]
Mapping of homologs : NCBIRAD23A [Mapview hg19]  RAD23A [Mapview hg38]
OMIM600061   
Gene and transcription
Genbank (Entrez)AB209713 AI057203 AI081136 AK289908 AK293219
RefSeq transcript (Entrez)NM_001270362 NM_001270363 NM_005053
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAD23A
Cluster EST : UnigeneHs.643267 [ NCBI ]
CGAP (NCI)Hs.643267
Alternative Splicing GalleryENSG00000179262
Gene ExpressionRAD23A [ NCBI-GEO ]   RAD23A [ EBI - ARRAY_EXPRESS ]   RAD23A [ SEEK ]   RAD23A [ MEM ]
Gene Expression Viewer (FireBrowse)RAD23A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5886
GTEX Portal (Tissue expression)RAD23A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP54725   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP54725  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP54725
Splice isoforms : SwissVarP54725
PhosPhoSitePlusP54725
Domaine pattern : Prosite (Expaxy)UBA (PS50030)    UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Rad23    STI1_HS-bd    UBA    UBA-like    Ubiquitin-rel_dom    Ubiquitin_dom    XPC-bd   
Domain families : Pfam (Sanger)UBA (PF00627)    ubiquitin (PF00240)    XPC-binding (PF09280)   
Domain families : Pfam (NCBI)pfam00627    pfam00240    pfam09280   
Domain families : Smart (EMBL)STI1 (SM00727)  UBA (SM00165)  UBQ (SM00213)  
Conserved Domain (NCBI)RAD23A
DMDM Disease mutations5886
Blocks (Seattle)RAD23A
PDB (SRS)1DV0    1F4I    1IFY    1OQY    1P98    1P9D    1QZE    1TP4    1ZO6    2WYQ   
PDB (PDBSum)1DV0    1F4I    1IFY    1OQY    1P98    1P9D    1QZE    1TP4    1ZO6    2WYQ   
PDB (IMB)1DV0    1F4I    1IFY    1OQY    1P98    1P9D    1QZE    1TP4    1ZO6    2WYQ   
PDB (RSDB)1DV0    1F4I    1IFY    1OQY    1P98    1P9D    1QZE    1TP4    1ZO6    2WYQ   
Structural Biology KnowledgeBase1DV0    1F4I    1IFY    1OQY    1P98    1P9D    1QZE    1TP4    1ZO6    2WYQ   
SCOP (Structural Classification of Proteins)1DV0    1F4I    1IFY    1OQY    1P98    1P9D    1QZE    1TP4    1ZO6    2WYQ   
CATH (Classification of proteins structures)1DV0    1F4I    1IFY    1OQY    1P98    1P9D    1QZE    1TP4    1ZO6    2WYQ   
SuperfamilyP54725
Human Protein AtlasENSG00000179262
Peptide AtlasP54725
HPRD07191
IPIIPI00008219   IPI01011338   
Protein Interaction databases
DIP (DOE-UCLA)P54725
IntAct (EBI)P54725
FunCoupENSG00000179262
BioGRIDRAD23A
STRING (EMBL)RAD23A
ZODIACRAD23A
Ontologies - Pathways
QuickGOP54725
Ontology : AmiGOproteasome complex  damaged DNA binding  single-stranded DNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  microtubule organizing center  cytosol  nucleotide-excision repair  viral process  protein deubiquitination  kinase binding  polyubiquitin binding  protein destabilization  regulation of proteasomal ubiquitin-dependent protein catabolic process  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  protein complex  positive regulation of viral genome replication  positive regulation of cell cycle  ubiquitin-specific protease binding  
Ontology : EGO-EBIproteasome complex  damaged DNA binding  single-stranded DNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  microtubule organizing center  cytosol  nucleotide-excision repair  viral process  protein deubiquitination  kinase binding  polyubiquitin binding  protein destabilization  regulation of proteasomal ubiquitin-dependent protein catabolic process  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  protein complex  positive regulation of viral genome replication  positive regulation of cell cycle  ubiquitin-specific protease binding  
Pathways : KEGGNucleotide excision repair    Protein processing in endoplasmic reticulum   
NDEx NetworkRAD23A
Atlas of Cancer Signalling NetworkRAD23A
Wikipedia pathwaysRAD23A
Orthology - Evolution
OrthoDB5886
GeneTree (enSembl)ENSG00000179262
Phylogenetic Trees/Animal Genes : TreeFamRAD23A
HOVERGENP54725
HOGENOMP54725
Homologs : HomoloGeneRAD23A
Homology/Alignments : Family Browser (UCSC)RAD23A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAD23A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAD23A
dbVarRAD23A
ClinVarRAD23A
1000_GenomesRAD23A 
Exome Variant ServerRAD23A
ExAC (Exome Aggregation Consortium)RAD23A (select the gene name)
Genetic variants : HAPMAP5886
Genomic Variants (DGV)RAD23A [DGVbeta]
DECIPHERRAD23A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAD23A 
Mutations
ICGC Data PortalRAD23A 
TCGA Data PortalRAD23A 
Broad Tumor PortalRAD23A
OASIS PortalRAD23A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAD23A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAD23A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAD23A
DgiDB (Drug Gene Interaction Database)RAD23A
DoCM (Curated mutations)RAD23A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAD23A (select a term)
intoGenRAD23A
Cancer3DRAD23A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600061   
Orphanet
MedgenRAD23A
Genetic Testing Registry RAD23A
NextProtP54725 [Medical]
TSGene5886
GENETestsRAD23A
Target ValidationRAD23A
Huge Navigator RAD23A [HugePedia]
snp3D : Map Gene to Disease5886
BioCentury BCIQRAD23A
ClinGenRAD23A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5886
Chemical/Pharm GKB GenePA34172
Clinical trialRAD23A
Miscellaneous
canSAR (ICR)RAD23A (select the gene name)
Probes
Litterature
PubMed113 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAD23A
EVEXRAD23A
GoPubMedRAD23A
iHOPRAD23A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:52:21 CEST 2017

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