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RBFOX2 (RNA binding fox-1 homolog 2)

Identity

Alias (NCBI)FOX2
Fox-2
HNRBP2
HRNBP2
RBM9
RTA
dJ106I20.3
fxh
HGNC (Hugo) RBFOX2
HGNC Alias symbHNRBP2
FOX-2
HRNBP2
HGNC Alias namehexaribonucleotide binding protein 2
HGNC Previous nameRBM9
HGNC Previous nameRNA binding motif protein 9
 RNA binding protein, fox-1 homolog (C. elegans) 2
 RNA binding protein, fox-1 homolog 2
LocusID (NCBI) 23543
Atlas_Id 53203
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 35738736 and ends at 35840464 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AQP7P1 (9q13) / RBFOX2 (22q12.3)FBXO24 (7q22.1) / RBFOX2 (22q12.3)LOC399806 () / RBFOX2 (22q12.3)
NKTR (3p22.1) / RBFOX2 (22q12.3)NUP50 (22q13.31) / RBFOX2 (22q12.3)RBFOX2 (22q12.3) / AHCYL1 (1p13.3)
RBFOX2 (22q12.3) / CAPZA1 (1p13.2)RBFOX2 (22q12.3) / LGALS2 (22q13.1)RBFOX2 (22q12.3) / MED16 (19p13.3)
RBFOX2 (22q12.3) / NTSR1 (20q13.33)RBFOX2 (22q12.3) / RBFOX2 (22q12.3)SLC25A17 (22q13.2) / RBFOX2 (22q12.3)
SSR1 (6p24.3) / RBFOX2 (22q12.3)NUP50 22q13.31 / RBFOX2 22q12.3RBFOX2 22q12.3 / LGALS2 22q13.1
RBFOX2 22q12.3 / NTSR1 20q13.33SLC25A17 22q13.2 / RBFOX2 22q12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)RBFOX2   9906
Cards
Entrez_Gene (NCBI)RBFOX2    RNA binding fox-1 homolog 2
AliasesFOX2; Fox-2; HNRBP2; HRNBP2; 
RBM9; RTA; dJ106I20.3; fxh
GeneCards (Weizmann)RBFOX2
Ensembl hg19 (Hinxton)ENSG00000100320 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100320 [Gene_View]  ENSG00000100320 [Sequence]  chr22:35738736-35840464 [Contig_View]  RBFOX2 [Vega]
ICGC DataPortalENSG00000100320
TCGA cBioPortalRBFOX2
AceView (NCBI)RBFOX2
Genatlas (Paris)RBFOX2
SOURCE (Princeton)RBFOX2
Genetics Home Reference (NIH)RBFOX2
Genomic and cartography
GoldenPath hg38 (UCSC)RBFOX2  -     chr22:35738736-35840464 -  22q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBFOX2  -     22q12.3   [Description]    (hg19-Feb_2009)
GoldenPathRBFOX2 - 22q12.3 [CytoView hg19]  RBFOX2 - 22q12.3 [CytoView hg38]
ImmunoBaseENSG00000100320
Genome Data Viewer NCBIRBFOX2 [Mapview hg19]  
OMIM612149   
Gene and transcription
Genbank (Entrez)AA610054 AB649123 AF229058 AK055213 AK057055
RefSeq transcript (Entrez)NM_001031695 NM_001082576 NM_001082577 NM_001082578 NM_001082579 NM_001349982 NM_001349983 NM_001349989 NM_001349990 NM_001349991 NM_001349992 NM_001349994 NM_001349995 NM_001349996 NM_001349997 NM_001349998 NM_001349999 NM_001394108 NM_001394109 NM_001394110 NM_001394111 NM_001394112 NM_001394113 NM_001394114 NM_001394115 NM_014309
Consensus coding sequences : CCDS (NCBI)RBFOX2
Gene ExpressionRBFOX2 [ NCBI-GEO ]   RBFOX2 [ EBI - ARRAY_EXPRESS ]   RBFOX2 [ SEEK ]   RBFOX2 [ MEM ]
Gene Expression Viewer (FireBrowse)RBFOX2 [ Firebrowse - Broad ]
GenevisibleExpression of RBFOX2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23543
GTEX Portal (Tissue expression)RBFOX2
Human Protein AtlasENSG00000100320-RBFOX2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RBFOX2
Human Protein Atlas [tissue]ENSG00000100320-RBFOX2 [tissue]
HPRD15231
Protein Interaction databases
BioGRIDRBFOX2
STRING (EMBL)RBFOX2
ZODIACRBFOX2
Ontologies - Pathways
Litterature
PubMed97 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRBFOX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:25 CEST 2021

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