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RNF144A (ring finger protein 144A)

Identity

Alias_namesRNF144
ring finger protein 144
Alias_symbol (synonym)UBCE7IP4
KIAA0161
Other aliashUIP4
HGNC (Hugo) RNF144A
LocusID (NCBI) 9781
Atlas_Id 47523
Location 2p25.1  [Link to chromosome band 2p25]
Location_base_pair Starts at 6917418 and ends at 7076353 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARPC4 (3p25.3) / RNF144A (2p25.2)BOLA2 (16p11.2) / RNF144A (2p25.2)RNF144A (2p25.2) / CCNJL (5q33.3)
RNF144A (2p25.2) / DYNC2H1 (11q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF144A   20457
Cards
Entrez_Gene (NCBI)RNF144A  9781  ring finger protein 144A
AliasesRNF144; UBCE7IP4; hUIP4
GeneCards (Weizmann)RNF144A
Ensembl hg19 (Hinxton)ENSG00000151692 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151692 [Gene_View]  chr2:6917418-7076353 [Contig_View]  RNF144A [Vega]
ICGC DataPortalENSG00000151692
TCGA cBioPortalRNF144A
AceView (NCBI)RNF144A
Genatlas (Paris)RNF144A
WikiGenes9781
SOURCE (Princeton)RNF144A
Genetics Home Reference (NIH)RNF144A
Genomic and cartography
GoldenPath hg38 (UCSC)RNF144A  -     chr2:6917418-7076353 +  2p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF144A  -     2p25.1   [Description]    (hg19-Feb_2009)
EnsemblRNF144A - 2p25.1 [CytoView hg19]  RNF144A - 2p25.1 [CytoView hg38]
Mapping of homologs : NCBIRNF144A [Mapview hg19]  RNF144A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK293854 AW662667 BC035051 BC050373 BM550396
RefSeq transcript (Entrez)NM_001349181 NM_001349182 NM_001349183 NM_001349184 NM_001349185 NM_001349186 NM_014746
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF144A
Cluster EST : UnigeneHs.716039 [ NCBI ]
CGAP (NCI)Hs.716039
Alternative Splicing GalleryENSG00000151692
Gene ExpressionRNF144A [ NCBI-GEO ]   RNF144A [ EBI - ARRAY_EXPRESS ]   RNF144A [ SEEK ]   RNF144A [ MEM ]
Gene Expression Viewer (FireBrowse)RNF144A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9781
GTEX Portal (Tissue expression)RNF144A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50876   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP50876  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP50876
Splice isoforms : SwissVarP50876
PhosPhoSitePlusP50876
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)E3_UB_ligase_RBR    IBR_dom    Znf_RING    Znf_RING_CS   
Domain families : Pfam (Sanger)IBR (PF01485)   
Domain families : Pfam (NCBI)pfam01485   
Domain families : Smart (EMBL)IBR (SM00647)  
Conserved Domain (NCBI)RNF144A
DMDM Disease mutations9781
Blocks (Seattle)RNF144A
PDB (SRS)1WIM   
PDB (PDBSum)1WIM   
PDB (IMB)1WIM   
PDB (RSDB)1WIM   
Structural Biology KnowledgeBase1WIM   
SCOP (Structural Classification of Proteins)1WIM   
CATH (Classification of proteins structures)1WIM   
SuperfamilyP50876
Human Protein AtlasENSG00000151692
Peptide AtlasP50876
HPRD11510
IPIIPI00220842   IPI00894443   IPI00892873   
Protein Interaction databases
DIP (DOE-UCLA)P50876
IntAct (EBI)P50876
FunCoupENSG00000151692
BioGRIDRNF144A
STRING (EMBL)RNF144A
ZODIACRNF144A
Ontologies - Pathways
QuickGOP50876
Ontology : AmiGOubiquitin ligase complex  protein polyubiquitination  Golgi apparatus  plasma membrane  zinc ion binding  endosome membrane  integral component of membrane  protein ubiquitination  cytoplasmic vesicle membrane  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  intracellular membrane-bounded organelle  ubiquitin protein ligase activity  ubiquitin protein ligase activity  
Ontology : EGO-EBIubiquitin ligase complex  protein polyubiquitination  Golgi apparatus  plasma membrane  zinc ion binding  endosome membrane  integral component of membrane  protein ubiquitination  cytoplasmic vesicle membrane  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  intracellular membrane-bounded organelle  ubiquitin protein ligase activity  ubiquitin protein ligase activity  
NDEx NetworkRNF144A
Atlas of Cancer Signalling NetworkRNF144A
Wikipedia pathwaysRNF144A
Orthology - Evolution
OrthoDB9781
GeneTree (enSembl)ENSG00000151692
Phylogenetic Trees/Animal Genes : TreeFamRNF144A
HOVERGENP50876
HOGENOMP50876
Homologs : HomoloGeneRNF144A
Homology/Alignments : Family Browser (UCSC)RNF144A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF144A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF144A
dbVarRNF144A
ClinVarRNF144A
1000_GenomesRNF144A 
Exome Variant ServerRNF144A
ExAC (Exome Aggregation Consortium)RNF144A (select the gene name)
Genetic variants : HAPMAP9781
Genomic Variants (DGV)RNF144A [DGVbeta]
DECIPHERRNF144A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF144A 
Mutations
ICGC Data PortalRNF144A 
TCGA Data PortalRNF144A 
Broad Tumor PortalRNF144A
OASIS PortalRNF144A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF144A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF144A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF144A
DgiDB (Drug Gene Interaction Database)RNF144A
DoCM (Curated mutations)RNF144A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF144A (select a term)
intoGenRNF144A
Cancer3DRNF144A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF144A
Genetic Testing Registry RNF144A
NextProtP50876 [Medical]
TSGene9781
GENETestsRNF144A
Target ValidationRNF144A
Huge Navigator RNF144A [HugePedia]
snp3D : Map Gene to Disease9781
BioCentury BCIQRNF144A
ClinGenRNF144A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9781
Chemical/Pharm GKB GenePA162401542
Clinical trialRNF144A
Miscellaneous
canSAR (ICR)RNF144A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF144A
EVEXRNF144A
GoPubMedRNF144A
iHOPRNF144A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:29:03 CEST 2017

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