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RPL27A (ribosomal protein L27a)

Identity

Alias_symbol (synonym)L27A
Other alias
HGNC (Hugo) RPL27A
LocusID (NCBI) 6157
Atlas_Id 42153
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 8703995 and ends at 8711419 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MAN2C1 (15q24.2) / RPL27A (11p15.4)RPL27A (11p15.4) / MAN2A1 (5q21.3)RPL27A (11p15.4) / RPL27A (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL27A   10329
Cards
Entrez_Gene (NCBI)RPL27A  6157  ribosomal protein L27a
AliasesL27A
GeneCards (Weizmann)RPL27A
Ensembl hg19 (Hinxton)ENSG00000166441 [Gene_View]  chr11:8703995-8711419 [Contig_View]  RPL27A [Vega]
Ensembl hg38 (Hinxton)ENSG00000166441 [Gene_View]  chr11:8703995-8711419 [Contig_View]  RPL27A [Vega]
ICGC DataPortalENSG00000166441
TCGA cBioPortalRPL27A
AceView (NCBI)RPL27A
Genatlas (Paris)RPL27A
WikiGenes6157
SOURCE (Princeton)RPL27A
Genetics Home Reference (NIH)RPL27A
Genomic and cartography
GoldenPath hg19 (UCSC)RPL27A  -     chr11:8703995-8711419 +  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPL27A  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblRPL27A - 11p15.4 [CytoView hg19]  RPL27A - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIRPL27A [Mapview hg19]  RPL27A [Mapview hg38]
OMIM603637   
Gene and transcription
Genbank (Entrez)AI809856 AK125453 AK311767 BC004284 BC005326
RefSeq transcript (Entrez)NM_000990 NM_032650
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)RPL27A
Cluster EST : UnigeneHs.523463 [ NCBI ]
CGAP (NCI)Hs.523463
Alternative Splicing GalleryENSG00000166441
Gene ExpressionRPL27A [ NCBI-GEO ]   RPL27A [ EBI - ARRAY_EXPRESS ]   RPL27A [ SEEK ]   RPL27A [ MEM ]
Gene Expression Viewer (FireBrowse)RPL27A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6157
GTEX Portal (Tissue expression)RPL27A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46776   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP46776  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP46776
Splice isoforms : SwissVarP46776
PhosPhoSitePlusP46776
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L15 (PS00475)   
Domains : Interpro (EBI)Ribosomal_L15    Ribosomal_L15_CS    Ribosomal_L18e/L15P   
Domain families : Pfam (Sanger)Ribosomal_L18e (PF00828)   
Domain families : Pfam (NCBI)pfam00828   
Conserved Domain (NCBI)RPL27A
DMDM Disease mutations6157
Blocks (Seattle)RPL27A
PDB (SRS)4BXF    4UG0    4V6X    5AJ0   
PDB (PDBSum)4BXF    4UG0    4V6X    5AJ0   
PDB (IMB)4BXF    4UG0    4V6X    5AJ0   
PDB (RSDB)4BXF    4UG0    4V6X    5AJ0   
Structural Biology KnowledgeBase4BXF    4UG0    4V6X    5AJ0   
SCOP (Structural Classification of Proteins)4BXF    4UG0    4V6X    5AJ0   
CATH (Classification of proteins structures)4BXF    4UG0    4V6X    5AJ0   
SuperfamilyP46776
Human Protein AtlasENSG00000166441
Peptide AtlasP46776
HPRD04701
IPIIPI00456758   IPI00977964   IPI00980350   IPI00977590   IPI00976934   IPI00975620   
Protein Interaction databases
DIP (DOE-UCLA)P46776
IntAct (EBI)P46776
FunCoupENSG00000166441
BioGRIDRPL27A
STRING (EMBL)RPL27A
ZODIACRPL27A
Ontologies - Pathways
QuickGOP46776
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  poly(A) RNA binding  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  poly(A) RNA binding  
Pathways : KEGGRibosome   
NDEx NetworkRPL27A
Atlas of Cancer Signalling NetworkRPL27A
Wikipedia pathwaysRPL27A
Orthology - Evolution
OrthoDB6157
GeneTree (enSembl)ENSG00000166441
Phylogenetic Trees/Animal Genes : TreeFamRPL27A
HOVERGENP46776
HOGENOMP46776
Homologs : HomoloGeneRPL27A
Homology/Alignments : Family Browser (UCSC)RPL27A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL27A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL27A
dbVarRPL27A
ClinVarRPL27A
1000_GenomesRPL27A 
Exome Variant ServerRPL27A
ExAC (Exome Aggregation Consortium)RPL27A (select the gene name)
Genetic variants : HAPMAP6157
Genomic Variants (DGV)RPL27A [DGVbeta]
DECIPHER (Syndromes)11:8703995-8711419  ENSG00000166441
CONAN: Copy Number AnalysisRPL27A 
Mutations
ICGC Data PortalRPL27A 
TCGA Data PortalRPL27A 
Broad Tumor PortalRPL27A
OASIS PortalRPL27A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL27A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL27A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL27A
DgiDB (Drug Gene Interaction Database)RPL27A
DoCM (Curated mutations)RPL27A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL27A (select a term)
intoGenRPL27A
Cancer3DRPL27A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603637   
Orphanet
MedgenRPL27A
Genetic Testing Registry RPL27A
NextProtP46776 [Medical]
TSGene6157
GENETestsRPL27A
Huge Navigator RPL27A [HugePedia]
snp3D : Map Gene to Disease6157
BioCentury BCIQRPL27A
ClinGenRPL27A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6157
Chemical/Pharm GKB GenePA34708
Clinical trialRPL27A
Miscellaneous
canSAR (ICR)RPL27A (select the gene name)
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL27A
EVEXRPL27A
GoPubMedRPL27A
iHOPRPL27A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:17:53 CEST 2017

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