Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RRAS (related RAS viral (r-ras) oncogene homolog)

Identity

Other names-
HGNC (Hugo) RRAS
LocusID (NCBI) 6237
Atlas_Id 42172
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50138549 and ends at 50143400 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRAS   10447
Cards
Entrez_Gene (NCBI)RRAS  6237  related RAS viral (r-ras) oncogene homolog
Aliases
GeneCards (Weizmann)RRAS
Ensembl hg19 (Hinxton)ENSG00000126458 [Gene_View]  chr19:50138549-50143400 [Contig_View]  RRAS [Vega]
Ensembl hg38 (Hinxton)ENSG00000126458 [Gene_View]  chr19:50138549-50143400 [Contig_View]  RRAS [Vega]
ICGC DataPortalENSG00000126458
TCGA cBioPortalRRAS
AceView (NCBI)RRAS
Genatlas (Paris)RRAS
WikiGenes6237
SOURCE (Princeton)RRAS
Genomic and cartography
GoldenPath hg19 (UCSC)RRAS  -     chr19:50138549-50143400 -  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RRAS  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblRRAS - 19q13.33 [CytoView hg19]  RRAS - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIRRAS [Mapview hg19]  RRAS [Mapview hg38]
OMIM165090   
Gene and transcription
Genbank (Entrez)AF493920 BC016286 BC016318 BT006805 CR541944
RefSeq transcript (Entrez)NM_006270
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_042222 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)RRAS
Cluster EST : UnigeneHs.515536 [ NCBI ]
CGAP (NCI)Hs.515536
Alternative Splicing GalleryENSG00000126458
Gene ExpressionRRAS [ NCBI-GEO ]   RRAS [ EBI - ARRAY_EXPRESS ]   RRAS [ SEEK ]   RRAS [ MEM ]
Gene Expression Viewer (FireBrowse)RRAS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6237
GTEX Portal (Tissue expression)RRAS
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10301 (Uniprot)
NextProtP10301  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP10301
Splice isoforms : SwissVarP10301 (Swissvar)
PhosPhoSitePlusP10301
Domaine pattern : Prosite (Expaxy)RAS (PS51421)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase    Small_GTPase_Ras   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAS (SM00173)  
DMDM Disease mutations6237
Blocks (Seattle)RRAS
PDB (SRS)2FN4   
PDB (PDBSum)2FN4   
PDB (IMB)2FN4   
PDB (RSDB)2FN4   
Structural Biology KnowledgeBase2FN4   
SCOP (Structural Classification of Proteins)2FN4   
CATH (Classification of proteins structures)2FN4   
SuperfamilyP10301
Human Protein AtlasENSG00000126458
Peptide AtlasP10301
HPRD01299
IPIIPI00020418   
Protein Interaction databases
DIP (DOE-UCLA)P10301
IntAct (EBI)P10301
FunCoupENSG00000126458
BioGRIDRRAS
STRING (EMBL)RRAS
ZODIACRRAS
Ontologies - Pathways
QuickGOP10301
Ontology : AmiGOleukocyte differentiation  GTPase activity  GTPase activity  protein binding  GTP binding  intracellular  plasma membrane  focal adhesion  intracellular protein transport  nucleocytoplasmic transport  Ras protein signal transduction  metabolic process  GDP binding  GDP binding  negative regulation of cell migration  protein complex binding  positive regulation of angiogenesis  regulation of protein kinase B signaling  face morphogenesis  extracellular exosome  regulation of ERK1 and ERK2 cascade  
Ontology : EGO-EBIleukocyte differentiation  GTPase activity  GTPase activity  protein binding  GTP binding  intracellular  plasma membrane  focal adhesion  intracellular protein transport  nucleocytoplasmic transport  Ras protein signal transduction  metabolic process  GDP binding  GDP binding  negative regulation of cell migration  protein complex binding  positive regulation of angiogenesis  regulation of protein kinase B signaling  face morphogenesis  extracellular exosome  regulation of ERK1 and ERK2 cascade  
Pathways : KEGGMAPK signaling pathway    Ras signaling pathway    Rap1 signaling pathway    Tight junction    Regulation of actin cytoskeleton    HTLV-I infection    Proteoglycans in cancer   
NDEx Network
Atlas of Cancer Signalling NetworkRRAS
Wikipedia pathwaysRRAS
Orthology - Evolution
OrthoDB6237
GeneTree (enSembl)ENSG00000126458
Phylogenetic Trees/Animal Genes : TreeFamRRAS
Homologs : HomoloGeneRRAS
Homology/Alignments : Family Browser (UCSC)RRAS
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRRAS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRAS
dbVarRRAS
ClinVarRRAS
1000_GenomesRRAS 
Exome Variant ServerRRAS
ExAC (Exome Aggregation Consortium)RRAS (select the gene name)
Genetic variants : HAPMAP6237
Genomic Variants (DGV)RRAS [DGVbeta]
Mutations
ICGC Data PortalRRAS 
TCGA Data PortalRRAS 
Broad Tumor PortalRRAS
OASIS PortalRRAS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRAS 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRAS
DgiDB (Drug Gene Interaction Database)RRAS
DoCM (Curated mutations)RRAS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRAS (select a term)
intoGenRRAS
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:50138549-50143400  ENSG00000126458
CONAN: Copy Number AnalysisRRAS 
Mutations and Diseases : HGMDRRAS
OMIM165090   
MedgenRRAS
Genetic Testing Registry RRAS
NextProtP10301 [Medical]
TSGene6237
GENETestsRRAS
Huge Navigator RRAS [HugePedia]
snp3D : Map Gene to Disease6237
BioCentury BCIQRRAS
ClinGenRRAS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6237
Chemical/Pharm GKB GenePA34861
Clinical trialRRAS
Miscellaneous
canSAR (ICR)RRAS (select the gene name)
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRAS
EVEXRRAS
GoPubMedRRAS
iHOPRRAS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 9 19:08:50 CEST 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.