| Nomenclature |
|---|
| HGNC (Hugo) | RXRG 10479 |
| Cards |
|---|
| Entrez_Gene (NCBI) | RXRG 6258 retinoid X receptor gamma |
| Aliases | NR2B3; RXRC |
| GeneCards (Weizmann) | RXRG |
| Ensembl hg19 (Hinxton) | ENSG00000143171 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000143171 [Gene_View] ENSG00000143171 [Sequence] chr1:165400922-165445355 [Contig_View] RXRG [Vega] |
| ICGC DataPortal | ENSG00000143171 |
| TCGA cBioPortal | RXRG |
| AceView (NCBI) | RXRG |
| Genatlas (Paris) | RXRG |
| WikiGenes | 6258 |
| SOURCE (Princeton) | RXRG |
| Genetics Home Reference (NIH) | RXRG |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | RXRG - chr1:165400922-165445355 - 6p21.32 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | RXRG - 6p21.32 [Description] (hg19-Feb_2009) |
| Ensembl | RXRG - 6p21.32 [CytoView hg19] RXRG - 6p21.32 [CytoView hg38] |
| Mapping of homologs : NCBI | RXRG [Mapview hg19] RXRG [Mapview hg38] |
| OMIM | 180247 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AB307706 AB593015 AB593016 AK125497 AK312922 |
| RefSeq transcript (Entrez) | NM_001256570 NM_001256571 NM_006917 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | RXRG |
| Cluster EST : Unigene | Hs.26550 [ NCBI ] |
| CGAP (NCI) | Hs.26550 |
| Alternative Splicing Gallery | ENSG00000143171 |
| Gene Expression | RXRG [ NCBI-GEO ] RXRG [ EBI - ARRAY_EXPRESS ]
RXRG [ SEEK ] RXRG [ MEM ] |
| Gene Expression Viewer (FireBrowse) | RXRG [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 6258 |
| GTEX Portal (Tissue expression) | RXRG |
| Human Protein Atlas | ENSG00000143171-RXRG [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | P48443 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | P48443 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | P48443 |
| Splice isoforms : SwissVar | P48443 |
| PhosPhoSitePlus | P48443 |
| Domaine pattern : Prosite (Expaxy) | NR_LBD (PS51843) NUCLEAR_REC_DBD_1 (PS00031) NUCLEAR_REC_DBD_2 (PS51030) |
| Domains : Interpro (EBI) | NHR_like_dom_sf Nuc_recep-AF1 Nucl_hrmn_rcpt_lig-bd Nuclear_hrmn_rcpt Retinoid-X_rcpt/HNF4 Znf_hrmn_rcpt Znf_NHR/GATA |
| Domain families : Pfam (Sanger) | Hormone_recep (PF00104) Nuc_recep-AF1 (PF11825) zf-C4 (PF00105) |
| Domain families : Pfam (NCBI) | pfam00104 pfam11825 pfam00105 |
| Domain families : Smart (EMBL) | HOLI (SM00430) ZnF_C4 (SM00399) |
| Conserved Domain (NCBI) | RXRG |
| DMDM Disease mutations | 6258 |
| Blocks (Seattle) | RXRG |
| PDB (SRS) | 2GL8 |
| PDB (PDBSum) | 2GL8 |
| PDB (IMB) | 2GL8 |
| PDB (RSDB) | 2GL8 |
| Structural Biology KnowledgeBase | 2GL8 |
| SCOP (Structural Classification of Proteins) | 2GL8 |
| CATH (Classification of proteins structures) | 2GL8 |
| Superfamily | P48443 |
| Human Protein Atlas [tissue] | ENSG00000143171-RXRG [tissue] |
| Peptide Atlas | P48443 |
| HPRD | 01579 |
| IPI | IPI00009736 IPI00982797 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | P48443 |
| IntAct (EBI) | P48443 |
| FunCoup | ENSG00000143171 |
| BioGRID | RXRG |
| STRING (EMBL) | RXRG |
| ZODIAC | RXRG |
| Ontologies - Pathways |
|---|
| QuickGO | P48443 |
| Ontology : AmiGO | RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding steroid hormone receptor activity 9-cis retinoic acid receptor activity protein binding nucleoplasm transcription initiation from RNA polymerase II promoter zinc ion binding steroid hormone mediated signaling pathway retinoic acid receptor signaling pathway protein homotetramerization positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus |
| Ontology : EGO-EBI | RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding steroid hormone receptor activity 9-cis retinoic acid receptor activity protein binding nucleoplasm transcription initiation from RNA polymerase II promoter zinc ion binding steroid hormone mediated signaling pathway retinoic acid receptor signaling pathway protein homotetramerization positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus |
| Pathways : KEGG | |
| NDEx Network | RXRG |
| Atlas of Cancer Signalling Network | RXRG |
| Wikipedia pathways | RXRG |
| Orthology - Evolution |
|---|
| OrthoDB | 6258 |
| GeneTree (enSembl) | ENSG00000143171 |
| Phylogenetic Trees/Animal Genes : TreeFam | RXRG |
| HOVERGEN | P48443 |
| HOGENOM | P48443 |
| Homologs : HomoloGene | RXRG |
| Homology/Alignments : Family Browser (UCSC) | RXRG |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | RXRG |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | RXRG [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | RXRG |
| dbVar | RXRG |
| ClinVar | RXRG |
| 1000_Genomes | RXRG |
| Exome Variant Server | RXRG |
| ExAC (Exome Aggregation Consortium) | ENSG00000143171 |
| GNOMAD Browser | ENSG00000143171 |
| Varsome Browser | RXRG |
| Genetic variants : HAPMAP | 6258 |
| Genomic Variants (DGV) | RXRG [DGVbeta] |
| DECIPHER | RXRG [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | RXRG |
| Mutations |
|---|
| ICGC Data Portal | RXRG |
| TCGA Data Portal | RXRG |
| Broad Tumor Portal | RXRG |
| OASIS Portal | RXRG [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | RXRG [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | RXRG |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search RXRG |
| DgiDB (Drug Gene Interaction Database) | RXRG |
| DoCM (Curated mutations) | RXRG (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | RXRG (select a term) |
| intoGen | RXRG |
| Cancer3D | RXRG(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 180247 |
| Orphanet | |
| DisGeNET | RXRG |
| Medgen | RXRG |
| Genetic Testing Registry | RXRG
|
| NextProt | P48443 [Medical] |
| TSGene | 6258 |
| GENETests | RXRG |
| Target Validation | RXRG |
| Huge Navigator |
RXRG [HugePedia] |
| snp3D : Map Gene to Disease | 6258 |
| BioCentury BCIQ | RXRG |
| ClinGen | RXRG |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 6258 |
| Chemical/Pharm GKB Gene | PA34892 |
| Clinical trial | RXRG |
| Miscellaneous |
|---|
| canSAR (ICR) | RXRG (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 88 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | RXRG |
| EVEX | RXRG |
| GoPubMed | RXRG |
| iHOP | RXRG |
