| Nomenclature |
|---|
| HGNC (Hugo) | RXRG 10479 |
| Cards |
|---|
| Entrez_Gene (NCBI) | RXRG 6258 retinoid X receptor gamma |
| Aliases | NR2B3; RXRC |
| GeneCards (Weizmann) | RXRG |
| Ensembl hg19 (Hinxton) | ENSG00000143171 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000143171 [Gene_View] ENSG00000143171 [Sequence] chr1:165400922-165445355 [Contig_View] RXRG [Vega] |
| ICGC DataPortal | ENSG00000143171 |
| TCGA cBioPortal | RXRG |
| AceView (NCBI) | RXRG |
| Genatlas (Paris) | RXRG |
| WikiGenes | 6258 |
| SOURCE (Princeton) | RXRG |
| Genetics Home Reference (NIH) | RXRG |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | RXRG - chr1:165400922-165445355 - 1q23.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | RXRG - 1q23.3 [Description] (hg19-Feb_2009) |
| Ensembl | RXRG - 1q23.3 [CytoView hg19] RXRG - 1q23.3 [CytoView hg38] |
| Mapping of homologs : NCBI | RXRG [Mapview hg19] RXRG [Mapview hg38] |
| OMIM | 180247 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AB307706 AB593015 AB593016 AK125497 AK312922 |
| RefSeq transcript (Entrez) | NM_001256570 NM_001256571 NM_006917 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | RXRG |
| Cluster EST : Unigene | Hs.26550 [ NCBI ] |
| CGAP (NCI) | Hs.26550 |
| Alternative Splicing Gallery | ENSG00000143171 |
| Gene Expression | RXRG [ NCBI-GEO ] RXRG [ EBI - ARRAY_EXPRESS ]
RXRG [ SEEK ] RXRG [ MEM ] |
| Gene Expression Viewer (FireBrowse) | RXRG [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 6258 |
| GTEX Portal (Tissue expression) | RXRG |
| Human Protein Atlas | ENSG00000143171-RXRG [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | P48443 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | P48443 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | P48443 |
| Splice isoforms : SwissVar | P48443 |
| PhosPhoSitePlus | P48443 |
| Domaine pattern : Prosite (Expaxy) | NR_LBD (PS51843) NUCLEAR_REC_DBD_1 (PS00031) NUCLEAR_REC_DBD_2 (PS51030) |
| Domains : Interpro (EBI) | NHR_like_dom_sf Nuc_recep-AF1 Nucl_hrmn_rcpt_lig-bd Nuclear_hrmn_rcpt Retinoid-X_rcpt/HNF4 Znf_hrmn_rcpt Znf_NHR/GATA |
| Domain families : Pfam (Sanger) | Hormone_recep (PF00104) Nuc_recep-AF1 (PF11825) zf-C4 (PF00105) |
| Domain families : Pfam (NCBI) | pfam00104 pfam11825 pfam00105 |
| Domain families : Smart (EMBL) | HOLI (SM00430) ZnF_C4 (SM00399) |
| Conserved Domain (NCBI) | RXRG |
| DMDM Disease mutations | 6258 |
| Blocks (Seattle) | RXRG |
| PDB (SRS) | 2GL8 |
| PDB (PDBSum) | 2GL8 |
| PDB (IMB) | 2GL8 |
| PDB (RSDB) | 2GL8 |
| Structural Biology KnowledgeBase | 2GL8 |
| SCOP (Structural Classification of Proteins) | 2GL8 |
| CATH (Classification of proteins structures) | 2GL8 |
| Superfamily | P48443 |
| Human Protein Atlas [tissue] | ENSG00000143171-RXRG [tissue] |
| Peptide Atlas | P48443 |
| HPRD | 01579 |
| IPI | IPI00009736 IPI00982797 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | P48443 |
| IntAct (EBI) | P48443 |
| FunCoup | ENSG00000143171 |
| BioGRID | RXRG |
| STRING (EMBL) | RXRG |
| ZODIAC | RXRG |
| Ontologies - Pathways |
|---|
| QuickGO | P48443 |
| Ontology : AmiGO | DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific steroid hormone receptor activity 9-cis retinoic acid receptor activity protein binding nucleoplasm transcription initiation from RNA polymerase II promoter zinc ion binding steroid hormone mediated signaling pathway sequence-specific DNA binding positive regulation of transcription by RNA polymerase II retinoic acid receptor signaling pathway |
| Ontology : EGO-EBI | DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific steroid hormone receptor activity 9-cis retinoic acid receptor activity protein binding nucleoplasm transcription initiation from RNA polymerase II promoter zinc ion binding steroid hormone mediated signaling pathway sequence-specific DNA binding positive regulation of transcription by RNA polymerase II retinoic acid receptor signaling pathway |
| Pathways : KEGG | PPAR signaling pathway Thyroid hormone signaling pathway Adipocytokine signaling pathway Pathways in cancer Transcriptional misregulation in cancer Thyroid cancer Small cell lung cancer Non-small cell lung cancer |
| NDEx Network | RXRG |
| Atlas of Cancer Signalling Network | RXRG |
| Wikipedia pathways | RXRG |
| Orthology - Evolution |
|---|
| OrthoDB | 6258 |
| GeneTree (enSembl) | ENSG00000143171 |
| Phylogenetic Trees/Animal Genes : TreeFam | RXRG |
| HOVERGEN | P48443 |
| HOGENOM | P48443 |
| Homologs : HomoloGene | RXRG |
| Homology/Alignments : Family Browser (UCSC) | RXRG |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | RXRG |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | RXRG [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | RXRG |
| dbVar | RXRG |
| ClinVar | RXRG |
| 1000_Genomes | RXRG |
| Exome Variant Server | RXRG |
| ExAC (Exome Aggregation Consortium) | ENSG00000143171 |
| GNOMAD Browser | ENSG00000143171 |
| Varsome Browser | RXRG |
| Genetic variants : HAPMAP | 6258 |
| Genomic Variants (DGV) | RXRG [DGVbeta] |
| DECIPHER | RXRG [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | RXRG |
| Mutations |
|---|
| ICGC Data Portal | RXRG |
| TCGA Data Portal | RXRG |
| Broad Tumor Portal | RXRG |
| OASIS Portal | RXRG [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | RXRG [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | RXRG |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search RXRG |
| DgiDB (Drug Gene Interaction Database) | RXRG |
| DoCM (Curated mutations) | RXRG (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | RXRG (select a term) |
| intoGen | RXRG |
| Cancer3D | RXRG(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 180247 |
| Orphanet | |
| DisGeNET | RXRG |
| Medgen | RXRG |
| Genetic Testing Registry | RXRG
|
| NextProt | P48443 [Medical] |
| TSGene | 6258 |
| GENETests | RXRG |
| Target Validation | RXRG |
| Huge Navigator |
RXRG [HugePedia] |
| snp3D : Map Gene to Disease | 6258 |
| BioCentury BCIQ | RXRG |
| ClinGen | RXRG |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 6258 |
| Chemical/Pharm GKB Gene | PA34892 |
| Clinical trial | RXRG |
| Miscellaneous |
|---|
| canSAR (ICR) | RXRG (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 88 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | RXRG |
| EVEX | RXRG |
| GoPubMed | RXRG |
| iHOP | RXRG |
