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SIGLEC9 (sialic acid binding Ig like lectin 9)

Identity

Alias_namessialic acid binding Ig-like lectin 9
Alias_symbol (synonym)CD329
Other aliasCDw329
FOAP-9
OBBP-LIKE
siglec-9
HGNC (Hugo) SIGLEC9
LocusID (NCBI) 27180
Atlas_Id 42296
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51628137 and ends at 51639520 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SIGLEC9   10878
Cards
Entrez_Gene (NCBI)SIGLEC9  27180  sialic acid binding Ig like lectin 9
AliasesCD329; CDw329; FOAP-9; OBBP-LIKE; 
siglec-9
GeneCards (Weizmann)SIGLEC9
Ensembl hg19 (Hinxton)ENSG00000129450 [Gene_View]  chr19:51628137-51639520 [Contig_View]  SIGLEC9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000129450 [Gene_View]  chr19:51628137-51639520 [Contig_View]  SIGLEC9 [Vega]
ICGC DataPortalENSG00000129450
TCGA cBioPortalSIGLEC9
AceView (NCBI)SIGLEC9
Genatlas (Paris)SIGLEC9
WikiGenes27180
SOURCE (Princeton)SIGLEC9
Genetics Home Reference (NIH)SIGLEC9
Genomic and cartography
GoldenPath hg19 (UCSC)SIGLEC9  -     chr19:51628137-51639520 +  19q13.41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SIGLEC9  -     19q13.41   [Description]    (hg38-Dec_2013)
EnsemblSIGLEC9 - 19q13.41 [CytoView hg19]  SIGLEC9 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBISIGLEC9 [Mapview hg19]  SIGLEC9 [Mapview hg38]
OMIM605640   
Gene and transcription
Genbank (Entrez)AB026265 AF227924 AF247180 AK297043 AK315272
RefSeq transcript (Entrez)NM_001198558 NM_014441
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)SIGLEC9
Cluster EST : UnigeneHs.245828 [ NCBI ]
CGAP (NCI)Hs.245828
Alternative Splicing GalleryENSG00000129450
Gene ExpressionSIGLEC9 [ NCBI-GEO ]   SIGLEC9 [ EBI - ARRAY_EXPRESS ]   SIGLEC9 [ SEEK ]   SIGLEC9 [ MEM ]
Gene Expression Viewer (FireBrowse)SIGLEC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27180
GTEX Portal (Tissue expression)SIGLEC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y336   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y336  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y336
Splice isoforms : SwissVarQ9Y336
PhosPhoSitePlusQ9Y336
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)SIGLEC9
DMDM Disease mutations27180
Blocks (Seattle)SIGLEC9
SuperfamilyQ9Y336
Human Protein AtlasENSG00000129450
Peptide AtlasQ9Y336
HPRD16133
IPIIPI00004315   IPI00985048   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y336
IntAct (EBI)Q9Y336
FunCoupENSG00000129450
BioGRIDSIGLEC9
STRING (EMBL)SIGLEC9
ZODIACSIGLEC9
Ontologies - Pathways
QuickGOQ9Y336
Ontology : AmiGOplasma membrane  integral component of plasma membrane  cell adhesion  cell surface receptor signaling pathway  carbohydrate binding  regulation of immune response  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  cell adhesion  cell surface receptor signaling pathway  carbohydrate binding  regulation of immune response  
NDEx NetworkSIGLEC9
Atlas of Cancer Signalling NetworkSIGLEC9
Wikipedia pathwaysSIGLEC9
Orthology - Evolution
OrthoDB27180
GeneTree (enSembl)ENSG00000129450
Phylogenetic Trees/Animal Genes : TreeFamSIGLEC9
HOVERGENQ9Y336
HOGENOMQ9Y336
Homologs : HomoloGeneSIGLEC9
Homology/Alignments : Family Browser (UCSC)SIGLEC9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSIGLEC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SIGLEC9
dbVarSIGLEC9
ClinVarSIGLEC9
1000_GenomesSIGLEC9 
Exome Variant ServerSIGLEC9
ExAC (Exome Aggregation Consortium)SIGLEC9 (select the gene name)
Genetic variants : HAPMAP27180
Genomic Variants (DGV)SIGLEC9 [DGVbeta]
DECIPHER (Syndromes)19:51628137-51639520  ENSG00000129450
CONAN: Copy Number AnalysisSIGLEC9 
Mutations
ICGC Data PortalSIGLEC9 
TCGA Data PortalSIGLEC9 
Broad Tumor PortalSIGLEC9
OASIS PortalSIGLEC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSIGLEC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSIGLEC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SIGLEC9
DgiDB (Drug Gene Interaction Database)SIGLEC9
DoCM (Curated mutations)SIGLEC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SIGLEC9 (select a term)
intoGenSIGLEC9
Cancer3DSIGLEC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605640   
Orphanet
MedgenSIGLEC9
Genetic Testing Registry SIGLEC9
NextProtQ9Y336 [Medical]
TSGene27180
GENETestsSIGLEC9
Huge Navigator SIGLEC9 [HugePedia]
snp3D : Map Gene to Disease27180
BioCentury BCIQSIGLEC9
ClinGenSIGLEC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27180
Chemical/Pharm GKB GenePA35779
Clinical trialSIGLEC9
Miscellaneous
canSAR (ICR)SIGLEC9 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSIGLEC9
EVEXSIGLEC9
GoPubMedSIGLEC9
iHOPSIGLEC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:19:18 CEST 2017

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