SLC12A6 (solute carrier family 12 (potassium/chloride transporters), member 6)

Identity

Other names	ACCPN
	DKFZP434D2135
	KCC3
	KCC3A
	KCC3B
HGNC	SLC12A6
Location	15q13
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	SLC12A6   10914
Entrez_Gene	SLC12A6  9990  solute carrier family 12 (potassium/chloride transporters), member 6
	Cards
GeneCards	SLC12A6
Ensembl	SLC12A6 [Search_View]   ENSG00000140199 [Gene_View]
Genatlas	SLC12A6
GeneLynx	SLC12A6
eGenome	SLC12A6
euGene	9990
	Genomic and cartography
GoldenPath	SLC12A6  -  15q13   chr15:32309489-32417253 -  15q14   [Description]    (hg18-March_2006)
Ensembl	SLC12A6 - 15q14 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	SLC12A6
	Gene and transcription
Genbank	AF105366 [ ENTREZ ]
Genbank	AF108831 [ ENTREZ ]
Genbank	AF116242 [ ENTREZ ]
Genbank	AF477977 [ ENTREZ ]
Genbank	AF531258 [ ENTREZ ]
RefSeq	NM_001042494 [ SRS ]    NM_001042494 [ ENTREZ ]
RefSeq	NM_001042495 [ SRS ]    NM_001042495 [ ENTREZ ]
RefSeq	NM_001042496 [ SRS ]    NM_001042496 [ ENTREZ ]
RefSeq	NM_001042497 [ SRS ]    NM_001042497 [ ENTREZ ]
RefSeq	NM_005135 [ SRS ]    NM_005135 [ ENTREZ ]
RefSeq	NM_133647 [ SRS ]    NM_133647 [ ENTREZ ]
RefSeq	AC_000058 [ SRS ]    AC_000058 [ ENTREZ ]
RefSeq	AC_000147 [ SRS ]    AC_000147 [ ENTREZ ]
RefSeq	NC_000015 [ SRS ]    NC_000015 [ ENTREZ ]
RefSeq	NG_007951 [ SRS ]    NG_007951 [ ENTREZ ]
RefSeq	NT_010194 [ SRS ]    NT_010194 [ ENTREZ ]
RefSeq	NW_001838214 [ SRS ]    NW_001838214 [ ENTREZ ]
RefSeq	NW_925840 [ SRS ]    NW_925840 [ ENTREZ ]
AceView	SLC12A6 AceView - NCBI
Unigene	Hs.510939 [ SRS ]    Hs.510939 [ NCBI ]     HS510939 [ spliceNest ]
Fast-db	1559 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q2VI00 [ SRS]    Q2VI00 [ EXPASY ]     Q2VI00 [ INTERPRO ]     Q2VI00 [ UNIPROT ]
Interpro	IPR000076 KCL_cotranspt [ SRS ]    IPR000076 KCL_cotranspt [ EBI ]
Interpro	IPR000622 KCl_cotranspt1 [ SRS ]    IPR000622 KCl_cotranspt1 [ EBI ]
Interpro	IPR004842 NaKCl_cotransptS [ SRS ]    IPR004842 NaKCl_cotransptS [ EBI ]
Interpro	IPR004841 Permease_region [ SRS ]    IPR004841 Permease_region [ EBI ]
CluSTr	Q2VI00
Pfam	PF00324 AA_permease [ SRS ]    PF00324 AA_permease [ Sanger ]    pfam00324 [ NCBI-CDD ]
Pfam	PF03522 KCl_Cotrans_1 [ SRS ]    PF03522 KCl_Cotrans_1 [ Sanger ]    pfam03522 [ NCBI-CDD ]
Blocks	Q2VI00
HPRD	09220
	Protein Interaction databases
DIP	Q2VI00
IntAct	Q2VI00
	Polymorphism : SNP, mutations, diseases
OMIM	218000;604878    [ map ]
GENECLINICS	218000;604878
SNP	SLC12A6 [dbSNP-NCBI]
SNP	NM_001042494 [SNP-NCI]
SNP	NM_001042495 [SNP-NCI]
SNP	NM_001042496 [SNP-NCI]
SNP	NM_001042497 [SNP-NCI]
SNP	NM_005135 [SNP-NCI]
SNP	NM_133647 [SNP-NCI]
SNP	SLC12A6 [GeneSNPs - Utah]  SLC12A6] [HGBASE - SRS]
HAPMAP	SLC12A6 [HAPMAP]
HGMD	SLC12A6
	General knowledge
Family Browser	SLC12A6 [UCSC Family Browser]
SOURCE	NM_001042494
SOURCE	NM_001042495
SOURCE	NM_001042496
SOURCE	NM_001042497
SOURCE	NM_005135
SOURCE	NM_133647
SMD	Hs.510939
SAGE	Hs.510939
GO	transporter activity [Amigo]  transporter activity
GO	membrane fraction [Amigo]  membrane fraction
GO	integral to plasma membrane [Amigo]  integral to plasma membrane
GO	ion transport [Amigo]  ion transport
GO	potassium ion transport [Amigo]  potassium ion transport
GO	sodium ion transport [Amigo]  sodium ion transport
GO	chloride transport [Amigo]  chloride transport
GO	cellular ion homeostasis [Amigo]  cellular ion homeostasis
GO	cell volume homeostasis [Amigo]  cell volume homeostasis
GO	regulation of blood pressure [Amigo]  regulation of blood pressure
GO	symporter activity [Amigo]  symporter activity
GO	cation:chloride symporter activity [Amigo]  cation:chloride symporter activity
GO	potassium:chloride symporter activity [Amigo]  potassium:chloride symporter activity
GO	membrane [Amigo]  membrane
GO	integral to membrane [Amigo]  integral to membrane
GO	potassium ion binding [Amigo]  potassium ion binding
PubGene	SLC12A6
TreeFam	SLC12A6
CTD	9990 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SLC12A6 Related clones (RZPD - Berlin)
	PubMed
PubMed	16 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Sep 29 18:22:16 2008