Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC26A2 (solute carrier family 26 (anion exchanger), member 2)

Identity

Other namesD5S1708
DTD
DTDST
EDM4
MST153
MSTP157
HGNC (Hugo) SLC26A2
LocusID (NCBI) 1836
Atlas_Id 49972
Location 5q32
Location_base_pair Starts at 149340300 and ends at 149366963 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC26A2   10994
Cards
Entrez_Gene (NCBI)SLC26A2  1836  solute carrier family 26 (anion exchanger), member 2
GeneCards (Weizmann)SLC26A2
Ensembl hg19 (Hinxton)ENSG00000155850 [Gene_View]  chr5:149340300-149366963 [Contig_View]  SLC26A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155850 [Gene_View]  chr5:149340300-149366963 [Contig_View]  SLC26A2 [Vega]
ICGC DataPortalENSG00000155850
TCGA cBioPortalSLC26A2
AceView (NCBI)SLC26A2
Genatlas (Paris)SLC26A2
WikiGenes1836
SOURCE (Princeton)SLC26A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC26A2  -     chr5:149340300-149366963 +  5q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC26A2  -     5q32   [Description]    (hg38-Dec_2013)
EnsemblSLC26A2 - 5q32 [CytoView hg19]  SLC26A2 - 5q32 [CytoView hg38]
Mapping of homologs : NCBISLC26A2 [Mapview hg19]  SLC26A2 [Mapview hg38]
OMIM222600   226900   256050   600972   606718   
Gene and transcription
Genbank (Entrez)AF190156 AF190160 AK025078 AK290358 AK312596
RefSeq transcript (Entrez)NM_000112
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_007147 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)SLC26A2
Cluster EST : UnigeneHs.302738 [ NCBI ]
CGAP (NCI)Hs.302738
Alternative Splicing : Fast-db (Paris)GSHG0024368
Alternative Splicing GalleryENSG00000155850
Gene ExpressionSLC26A2 [ NCBI-GEO ]     SLC26A2 [ SEEK ]   SLC26A2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50443 (Uniprot)
NextProtP50443  [Medical]
With graphics : InterProP50443
Splice isoforms : SwissVarP50443 (Swissvar)
Domaine pattern : Prosite (Expaxy)SLC26A (PS01130)    STAS (PS50801)   
Domains : Interpro (EBI)S04_transporter_CS    SLC26A2    STAS_dom    Sul_anion_transpt    Sulfate_tra_GLY    Sulph_transpt   
Related proteins : CluSTrP50443
Domain families : Pfam (Sanger)STAS (PF01740)    Sulfate_tra_GLY (PF13792)    Sulfate_transp (PF00916)   
Domain families : Pfam (NCBI)pfam01740    pfam13792    pfam00916   
DMDM Disease mutations1836
Blocks (Seattle)P50443
Human Protein AtlasENSG00000155850
Peptide AtlasP50443
HPRD05990
IPIIPI00032107   IPI00385074   IPI00916297   IPI00967157   
Protein Interaction databases
DIP (DOE-UCLA)P50443
IntAct (EBI)P50443
FunCoupENSG00000155850
BioGRIDSLC26A2
IntegromeDBSLC26A2
STRING (EMBL)SLC26A2
Ontologies - Pathways
QuickGOP50443
Ontology : AmiGOossification  plasma membrane  integral component of plasma membrane  carbohydrate metabolic process  xenobiotic metabolic process  ion transport  secondary active sulfate transmembrane transporter activity  sulfate transport  pathogenesis  sulfate transmembrane transporter activity  membrane  glycosaminoglycan metabolic process  small molecule metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process  transmembrane transport  extracellular exosome  sulfate transmembrane transport  
Ontology : EGO-EBIossification  plasma membrane  integral component of plasma membrane  carbohydrate metabolic process  xenobiotic metabolic process  ion transport  secondary active sulfate transmembrane transporter activity  sulfate transport  pathogenesis  sulfate transmembrane transporter activity  membrane  glycosaminoglycan metabolic process  small molecule metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process  transmembrane transport  extracellular exosome  sulfate transmembrane transport  
Protein Interaction DatabaseSLC26A2
DoCM (Curated mutations)SLC26A2
Wikipedia pathwaysSLC26A2
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC26A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC26A2
dbVarSLC26A2
ClinVarSLC26A2
1000_GenomesSLC26A2 
Exome Variant ServerSLC26A2
SNP (GeneSNP Utah)SLC26A2
SNP : HGBaseSLC26A2
Genetic variants : HAPMAPSLC26A2
Genomic Variants (DGV)SLC26A2 [DGVbeta]
Mutations
ICGC Data PortalSLC26A2 
TCGA Data PortalSLC26A2 
Tumor PortalSLC26A2
Somatic Mutations in Cancer : COSMICSLC26A2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)5:149340300-149366963
CONAN: Copy Number AnalysisSLC26A2 
Mutations and Diseases : HGMDSLC26A2
OMIM222600    226900    256050    600972    606718   
MedgenSLC26A2
NextProtP50443 [Medical]
GENETestsSLC26A2
Disease Genetic AssociationSLC26A2
Huge Navigator SLC26A2 [HugePedia]  SLC26A2 [HugeCancerGEM]
snp3D : Map Gene to Disease1836
DGIdb (Drug Gene Interaction db)SLC26A2
General knowledge
Homologs : HomoloGeneSLC26A2
Homology/Alignments : Family Browser (UCSC)SLC26A2
Phylogenetic Trees/Animal Genes : TreeFamSLC26A2
Chemical/Protein Interactions : CTD1836
Chemical/Pharm GKB GenePA149
Clinical trialSLC26A2
Cancer Resource (Charite)ENSG00000155850
Other databases
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
CoreMineSLC26A2
GoPubMedSLC26A2
iHOPSLC26A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 15:14:42 CEST 2015

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