Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC26A2 (solute carrier family 26 (anion exchanger), member 2)

Identity

Other namesD5S1708
DTD
DTDST
EDM4
MST153
MSTP157
HGNC (Hugo) SLC26A2
LocusID (NCBI) 1836
Location 5q32
Location_base_pair Starts at 149340300 and ends at 149366963 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC26A2   10994
Cards
Entrez_Gene (NCBI)SLC26A2  1836  solute carrier family 26 (anion exchanger), member 2
GeneCards (Weizmann)SLC26A2
Ensembl (Hinxton)ENSG00000155850 [Gene_View]  chr5:149340300-149366963 [Contig_View]  SLC26A2 [Vega]
AceView (NCBI)SLC26A2
Genatlas (Paris)SLC26A2
WikiGenes1836
SOURCE (Princeton)NM_000112
Genomic and cartography
GoldenPath (UCSC)SLC26A2  -  5q32   chr5:149340300-149366963 +  5q32   [Description]    (hg19-Feb_2009)
EnsemblSLC26A2 - 5q32 [CytoView]
Mapping of homologs : NCBISLC26A2 [Mapview]
OMIM222600   226900   256050   600972   606718   
Gene and transcription
Genbank (Entrez)AF190156 AF190160 AK025078 AK290358 AK312596
RefSeq transcript (Entrez)NM_000112
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NG_007147 NT_029289 NW_001838953 NW_004929324
Consensus coding sequences : CCDS (NCBI)SLC26A2
Cluster EST : UnigeneHs.302738 [ NCBI ]
CGAP (NCI)Hs.302738
Alternative Splicing : Fast-db (Paris)GSHG0024368
Alternative Splicing GalleryENSG00000155850
Gene ExpressionSLC26A2 [ NCBI-GEO ]     SLC26A2 [ SEEK ]   SLC26A2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50443 (Uniprot)
NextProtP50443  [Medical]
With graphics : InterProP50443
Splice isoforms : SwissVarP50443 (Swissvar)
Domaine pattern : Prosite (Expaxy)SLC26A (PS01130)    STAS (PS50801)   
Domains : Interpro (EBI)S04_transporter_CS    STAS_dom    SulP_transpt    Sulph_transpt   
Related proteins : CluSTrP50443
Domain families : Pfam (Sanger)STAS (PF01740)    Sulfate_transp (PF00916)   
Domain families : Pfam (NCBI)pfam01740    pfam00916   
DMDM Disease mutations1836
Blocks (Seattle)P50443
Human Protein AtlasENSG00000155850
Peptide AtlasP50443
HPRD05990
IPIIPI00032107   IPI00385074   IPI00916297   IPI00967157   
Protein Interaction databases
DIP (DOE-UCLA)P50443
IntAct (EBI)P50443
FunCoupENSG00000155850
BioGRIDSLC26A2
InParanoidP50443
Interologous Interaction database P50443
IntegromeDBSLC26A2
STRING (EMBL)SLC26A2
Ontologies - Pathways
Ontology : AmiGOossification  plasma membrane  integral to plasma membrane  carbohydrate metabolic process  xenobiotic metabolic process  ion transport  secondary active sulfate transmembrane transporter activity  sulfate transport  sulfate transmembrane transporter activity  membrane  glycosaminoglycan metabolic process  small molecule metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process  transmembrane transport  
Ontology : EGO-EBIossification  plasma membrane  integral to plasma membrane  carbohydrate metabolic process  xenobiotic metabolic process  ion transport  secondary active sulfate transmembrane transporter activity  sulfate transport  sulfate transmembrane transporter activity  membrane  glycosaminoglycan metabolic process  small molecule metabolic process  3'-phosphoadenosine 5'-phosphosulfate metabolic process  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process  transmembrane transport  
REACTOMESLC26A2
Protein Interaction DatabaseSLC26A2
Wikipedia pathwaysSLC26A2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLC26A2
SNP (GeneSNP Utah)SLC26A2
SNP : HGBaseSLC26A2
Genetic variants : HAPMAPSLC26A2
1000_GenomesSLC26A2 
ICGC programENSG00000155850 
Somatic Mutations in Cancer : COSMICSLC26A2 
CONAN: Copy Number AnalysisSLC26A2 
Mutations and Diseases : HGMDSLC26A2
OMIM222600    226900    256050    600972    606718   
GENETestsSLC26A2
Disease Genetic AssociationSLC26A2
Huge Navigator SLC26A2 [HugePedia]  SLC26A2 [HugeCancerGEM]
Genomic VariantsSLC26A2  SLC26A2 [DGVbeta]
Exome VariantSLC26A2
dbVarSLC26A2
ClinVarSLC26A2
snp3D : Map Gene to Disease1836
General knowledge
Homologs : HomoloGeneSLC26A2
Homology/Alignments : Family Browser (UCSC)SLC26A2
Phylogenetic Trees/Animal Genes : TreeFamSLC26A2
Chemical/Protein Interactions : CTD1836
Chemical/Pharm GKB GenePA149
Clinical trialSLC26A2
Cancer Resource (Charite)ENSG00000155850
Other databases
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
CoreMineSLC26A2
iHOPSLC26A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Mar 31 09:16:09 CEST 2014

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