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SLC26A2 (solute carrier family 26 member 2)

Identity

Other namesD5S1708
DTD
DTDST
EDM4
MST153
MSTP157
HGNC (Hugo) SLC26A2
LocusID (NCBI) 1836
Atlas_Id 49972
Location 5q32
Location_base_pair Starts at 149340300 and ends at 149366963 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GPM6B (Xp22.2) / SLC26A2 (5q32)UGGT2 (13q32.1) / SLC26A2 (5q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC26A2   10994
Cards
Entrez_Gene (NCBI)SLC26A2  1836  solute carrier family 26 member 2
GeneCards (Weizmann)SLC26A2
Ensembl hg19 (Hinxton)ENSG00000155850 [Gene_View]  chr5:149340300-149366963 [Contig_View]  SLC26A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155850 [Gene_View]  chr5:149340300-149366963 [Contig_View]  SLC26A2 [Vega]
ICGC DataPortalENSG00000155850
TCGA cBioPortalSLC26A2
AceView (NCBI)SLC26A2
Genatlas (Paris)SLC26A2
WikiGenes1836
SOURCE (Princeton)SLC26A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC26A2  -     chr5:149340300-149366963 +  5q32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC26A2  -     5q32   [Description]    (hg38-Dec_2013)
EnsemblSLC26A2 - 5q32 [CytoView hg19]  SLC26A2 - 5q32 [CytoView hg38]
Mapping of homologs : NCBISLC26A2 [Mapview hg19]  SLC26A2 [Mapview hg38]
OMIM222600   226900   256050   600972   606718   
Gene and transcription
Genbank (Entrez)AF190156 AF190160 AK025078 AK290358 AK312596
RefSeq transcript (Entrez)NM_000112
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_007147 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)SLC26A2
Cluster EST : UnigeneHs.302738 [ NCBI ]
CGAP (NCI)Hs.302738
Alternative Splicing GalleryENSG00000155850
Gene ExpressionSLC26A2 [ NCBI-GEO ]   SLC26A2 [ EBI - ARRAY_EXPRESS ]   SLC26A2 [ SEEK ]   SLC26A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC26A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1836
GTEX Portal (Tissue expression)SLC26A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50443 (Uniprot)
NextProtP50443  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP50443
Splice isoforms : SwissVarP50443 (Swissvar)
PhosPhoSitePlusP50443
Domaine pattern : Prosite (Expaxy)SLC26A (PS01130)    STAS (PS50801)   
Domains : Interpro (EBI)S04_transporter_CS    SLC26A/SulP_dom    SLC26A/SulP_fam    SLC26A2    STAS_dom   
Domain families : Pfam (Sanger)STAS (PF01740)    Sulfate_transp (PF00916)   
Domain families : Pfam (NCBI)pfam01740    pfam00916   
DMDM Disease mutations1836
Blocks (Seattle)SLC26A2
SuperfamilyP50443
Human Protein AtlasENSG00000155850
Peptide AtlasP50443
HPRD05990
IPIIPI00032107   IPI00385074   IPI00916297   IPI00967157   
Protein Interaction databases
DIP (DOE-UCLA)P50443
IntAct (EBI)P50443
FunCoupENSG00000155850
BioGRIDSLC26A2
STRING (EMBL)SLC26A2
ZODIACSLC26A2
Ontologies - Pathways
QuickGOP50443
Ontology : AmiGOossification  chloride channel activity  plasma membrane  integral component of plasma membrane  ion transport  secondary active sulfate transmembrane transporter activity  sulfate transport  bicarbonate transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  membrane  oxalate transmembrane transporter activity  oxalate transport  regulation of membrane potential  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process  regulation of intracellular pH  extracellular exosome  sulfate transmembrane transport  chloride transmembrane transport  
Ontology : EGO-EBIossification  chloride channel activity  plasma membrane  integral component of plasma membrane  ion transport  secondary active sulfate transmembrane transporter activity  sulfate transport  bicarbonate transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  bicarbonate transport  membrane  oxalate transmembrane transporter activity  oxalate transport  regulation of membrane potential  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process  regulation of intracellular pH  extracellular exosome  sulfate transmembrane transport  chloride transmembrane transport  
NDEx Network
Atlas of Cancer Signalling NetworkSLC26A2
Wikipedia pathwaysSLC26A2
Orthology - Evolution
OrthoDB1836
GeneTree (enSembl)ENSG00000155850
Phylogenetic Trees/Animal Genes : TreeFamSLC26A2
Homologs : HomoloGeneSLC26A2
Homology/Alignments : Family Browser (UCSC)SLC26A2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC26A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC26A2
dbVarSLC26A2
ClinVarSLC26A2
1000_GenomesSLC26A2 
Exome Variant ServerSLC26A2
ExAC (Exome Aggregation Consortium)SLC26A2 (select the gene name)
Genetic variants : HAPMAP1836
Genomic Variants (DGV)SLC26A2 [DGVbeta]
Mutations
ICGC Data PortalSLC26A2 
TCGA Data PortalSLC26A2 
Broad Tumor PortalSLC26A2
OASIS PortalSLC26A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC26A2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC26A2
DgiDB (Drug Gene Interaction Database)SLC26A2
DoCM (Curated mutations)SLC26A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC26A2 (select a term)
intoGenSLC26A2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)5:149340300-149366963  ENSG00000155850
CONAN: Copy Number AnalysisSLC26A2 
Mutations and Diseases : HGMDSLC26A2
OMIM222600    226900    256050    600972    606718   
MedgenSLC26A2
Genetic Testing Registry SLC26A2
NextProtP50443 [Medical]
TSGene1836
GENETestsSLC26A2
Huge Navigator SLC26A2 [HugePedia]
snp3D : Map Gene to Disease1836
BioCentury BCIQSLC26A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1836
Chemical/Pharm GKB GenePA149
Clinical trialSLC26A2
Miscellaneous
canSAR (ICR)SLC26A2 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC26A2
EVEXSLC26A2
GoPubMedSLC26A2
iHOPSLC26A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 8 19:06:02 CEST 2016

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