Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC36A1 (solute carrier family 36 member 1)

Identity

Alias_namessolute carrier family 36 (proton/amino acid symporter)
Alias_symbol (synonym)LYAAT-1
PAT1
TRAMD3
Other aliasDct1
LYAAT1
HGNC (Hugo) SLC36A1
LocusID (NCBI) 206358
Atlas_Id 50264
Location 5q33.1  [Link to chromosome band 5q33]
Location_base_pair Starts at 151447596 and ends at 151480144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MGEA5 (10q24.32) / SLC36A1 (5q33.1)SLC36A1 (5q33.1) / FAM65B (6p22.3)SLC36A1 (5q33.1) / TTC37 (5q15)
SLC36A1 5q33.1 / TTC37 5q15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC36A1   18761
Cards
Entrez_Gene (NCBI)SLC36A1  206358  solute carrier family 36 member 1
AliasesDct1; LYAAT1; PAT1; TRAMD3
GeneCards (Weizmann)SLC36A1
Ensembl hg19 (Hinxton)ENSG00000123643 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123643 [Gene_View]  chr5:151447596-151480144 [Contig_View]  SLC36A1 [Vega]
ICGC DataPortalENSG00000123643
TCGA cBioPortalSLC36A1
AceView (NCBI)SLC36A1
Genatlas (Paris)SLC36A1
WikiGenes206358
SOURCE (Princeton)SLC36A1
Genetics Home Reference (NIH)SLC36A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC36A1  -     chr5:151447596-151480144 +  5q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC36A1  -     5q33.1   [Description]    (hg19-Feb_2009)
EnsemblSLC36A1 - 5q33.1 [CytoView hg19]  SLC36A1 - 5q33.1 [CytoView hg38]
Mapping of homologs : NCBISLC36A1 [Mapview hg19]  SLC36A1 [Mapview hg38]
OMIM606561   
Gene and transcription
Genbank (Entrez)AF516142 AK000729 AK025102 AK057340 AK309323
RefSeq transcript (Entrez)NM_001308150 NM_001308151 NM_001349740 NM_078483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC36A1
Cluster EST : UnigeneHs.269004 [ NCBI ]
CGAP (NCI)Hs.269004
Alternative Splicing GalleryENSG00000123643
Gene ExpressionSLC36A1 [ NCBI-GEO ]   SLC36A1 [ EBI - ARRAY_EXPRESS ]   SLC36A1 [ SEEK ]   SLC36A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC36A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)206358
GTEX Portal (Tissue expression)SLC36A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z2H8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z2H8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z2H8
Splice isoforms : SwissVarQ7Z2H8
PhosPhoSitePlusQ7Z2H8
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC36A1
DMDM Disease mutations206358
Blocks (Seattle)SLC36A1
SuperfamilyQ7Z2H8
Human Protein AtlasENSG00000123643
Peptide AtlasQ7Z2H8
HPRD07584
IPIIPI00953049   IPI00413420   IPI00956096   IPI00982923   IPI00980928   IPI01018093   IPI00977202   IPI01018867   IPI00983981   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z2H8
IntAct (EBI)Q7Z2H8
FunCoupENSG00000123643
BioGRIDSLC36A1
STRING (EMBL)SLC36A1
ZODIACSLC36A1
Ontologies - Pathways
QuickGOQ7Z2H8
Ontology : AmiGOhydrogen:amino acid symporter activity  lysosome  lysosomal membrane  endoplasmic reticulum  plasma membrane  ion transport  amino acid transport  hydrogen ion transmembrane transporter activity  amino acid transmembrane transporter activity  L-alanine transmembrane transporter activity  glycine transmembrane transporter activity  L-proline transmembrane transporter activity  L-alanine transport  glycine transport  integral component of membrane  proline transmembrane transport  hydrogen ion transmembrane transport  
Ontology : EGO-EBIhydrogen:amino acid symporter activity  lysosome  lysosomal membrane  endoplasmic reticulum  plasma membrane  ion transport  amino acid transport  hydrogen ion transmembrane transporter activity  amino acid transmembrane transporter activity  L-alanine transmembrane transporter activity  glycine transmembrane transporter activity  L-proline transmembrane transporter activity  L-alanine transport  glycine transport  integral component of membrane  proline transmembrane transport  hydrogen ion transmembrane transport  
Pathways : KEGGProtein digestion and absorption   
NDEx NetworkSLC36A1
Atlas of Cancer Signalling NetworkSLC36A1
Wikipedia pathwaysSLC36A1
Orthology - Evolution
OrthoDB206358
GeneTree (enSembl)ENSG00000123643
Phylogenetic Trees/Animal Genes : TreeFamSLC36A1
HOVERGENQ7Z2H8
HOGENOMQ7Z2H8
Homologs : HomoloGeneSLC36A1
Homology/Alignments : Family Browser (UCSC)SLC36A1
Gene fusions - Rearrangements
Fusion : MitelmanSLC36A1/TTC37 [5q33.1/5q15]  
Fusion: TCGASLC36A1 5q33.1 TTC37 5q15 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC36A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC36A1
dbVarSLC36A1
ClinVarSLC36A1
1000_GenomesSLC36A1 
Exome Variant ServerSLC36A1
ExAC (Exome Aggregation Consortium)SLC36A1 (select the gene name)
Genetic variants : HAPMAP206358
Genomic Variants (DGV)SLC36A1 [DGVbeta]
DECIPHERSLC36A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC36A1 
Mutations
ICGC Data PortalSLC36A1 
TCGA Data PortalSLC36A1 
Broad Tumor PortalSLC36A1
OASIS PortalSLC36A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC36A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC36A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC36A1
DgiDB (Drug Gene Interaction Database)SLC36A1
DoCM (Curated mutations)SLC36A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC36A1 (select a term)
intoGenSLC36A1
Cancer3DSLC36A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606561   
Orphanet
MedgenSLC36A1
Genetic Testing Registry SLC36A1
NextProtQ7Z2H8 [Medical]
TSGene206358
GENETestsSLC36A1
Target ValidationSLC36A1
Huge Navigator SLC36A1 [HugePedia]
snp3D : Map Gene to Disease206358
BioCentury BCIQSLC36A1
ClinGenSLC36A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD206358
Chemical/Pharm GKB GenePA134870308
Clinical trialSLC36A1
Miscellaneous
canSAR (ICR)SLC36A1 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC36A1
EVEXSLC36A1
GoPubMedSLC36A1
iHOPSLC36A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:56:06 CEST 2017

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