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SLC36A1 (solute carrier family 36 member 1)

Identity

Alias (NCBI)Dct1
LYAAT1
PAT1
TRAMD3
HGNC (Hugo) SLC36A1
HGNC Alias symbLYAAT-1
PAT1
TRAMD3
HGNC Previous namesolute carrier family 36 (proton/amino acid symporter), member 1
LocusID (NCBI) 206358
Atlas_Id 50264
Location 5q33.1  [Link to chromosome band 5q33]
Location_base_pair Starts at 151447603 and ends at 151492379 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MGEA5 (10q24.32) / SLC36A1 (5q33.1)SLC36A1 (5q33.1) / FAM65B (6p22.3)SLC36A1 (5q33.1) / TTC37 (5q15)
SLC36A1 5q33.1 / TTC37 5q15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC36A1   18761
Cards
Entrez_Gene (NCBI)SLC36A1    solute carrier family 36 member 1
AliasesDct1; LYAAT1; PAT1; TRAMD3
GeneCards (Weizmann)SLC36A1
Ensembl hg19 (Hinxton)ENSG00000123643 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123643 [Gene_View]  ENSG00000123643 [Sequence]  chr5:151447603-151492379 [Contig_View]  SLC36A1 [Vega]
ICGC DataPortalENSG00000123643
TCGA cBioPortalSLC36A1
AceView (NCBI)SLC36A1
Genatlas (Paris)SLC36A1
SOURCE (Princeton)SLC36A1
Genetics Home Reference (NIH)SLC36A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC36A1  -     chr5:151447603-151492379 +  5q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC36A1  -     5q33.1   [Description]    (hg19-Feb_2009)
GoldenPathSLC36A1 - 5q33.1 [CytoView hg19]  SLC36A1 - 5q33.1 [CytoView hg38]
ImmunoBaseENSG00000123643
Genome Data Viewer NCBISLC36A1 [Mapview hg19]  
OMIM606561   
Gene and transcription
Genbank (Entrez)AF516142 AK000729 AK025102 AK057340 AK309323
RefSeq transcript (Entrez)NM_001308150 NM_001308151 NM_001349740 NM_078483
Consensus coding sequences : CCDS (NCBI)SLC36A1
Gene ExpressionSLC36A1 [ NCBI-GEO ]   SLC36A1 [ EBI - ARRAY_EXPRESS ]   SLC36A1 [ SEEK ]   SLC36A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC36A1 [ Firebrowse - Broad ]
GenevisibleExpression of SLC36A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)206358
GTEX Portal (Tissue expression)SLC36A1
Human Protein AtlasENSG00000123643-SLC36A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z2H8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z2H8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z2H8
PhosPhoSitePlusQ7Z2H8
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)SLC36A1
SuperfamilyQ7Z2H8
AlphaFold pdb e-kbQ7Z2H8   
Human Protein Atlas [tissue]ENSG00000123643-SLC36A1 [tissue]
HPRD07584
Protein Interaction databases
DIP (DOE-UCLA)Q7Z2H8
IntAct (EBI)Q7Z2H8
BioGRIDSLC36A1
STRING (EMBL)SLC36A1
ZODIACSLC36A1
Ontologies - Pathways
QuickGOQ7Z2H8
Ontology : AmiGOamino acid transmembrane transport  amino acid:proton symporter activity  taurine transmembrane transporter activity  protein binding  lysosomal membrane  endoplasmic reticulum  plasma membrane  ion transport  amino acid transport  amino acid transmembrane transporter activity  L-alanine transmembrane transporter activity  glycine transmembrane transporter activity  L-proline transmembrane transporter activity  taurine transport  L-alanine transport  glycine transport  proline transport  integral component of membrane  alanine transmembrane transporter activity  alanine transport  proline transmembrane transport  amino acid import across plasma membrane  proton transmembrane transport  
Ontology : EGO-EBIamino acid transmembrane transport  amino acid:proton symporter activity  taurine transmembrane transporter activity  protein binding  lysosomal membrane  endoplasmic reticulum  plasma membrane  ion transport  amino acid transport  amino acid transmembrane transporter activity  L-alanine transmembrane transporter activity  glycine transmembrane transporter activity  L-proline transmembrane transporter activity  taurine transport  L-alanine transport  glycine transport  proline transport  integral component of membrane  alanine transmembrane transporter activity  alanine transport  proline transmembrane transport  amino acid import across plasma membrane  proton transmembrane transport  
Pathways : KEGGProtein digestion and absorption   
NDEx NetworkSLC36A1
Atlas of Cancer Signalling NetworkSLC36A1
Wikipedia pathwaysSLC36A1
Orthology - Evolution
OrthoDB206358
GeneTree (enSembl)ENSG00000123643
Phylogenetic Trees/Animal Genes : TreeFamSLC36A1
Homologs : HomoloGeneSLC36A1
Homology/Alignments : Family Browser (UCSC)SLC36A1
Gene fusions - Rearrangements
Fusion : MitelmanSLC36A1/TTC37 [5q33.1/5q15]  
Fusion : QuiverSLC36A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC36A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC36A1
dbVarSLC36A1
ClinVarSLC36A1
MonarchSLC36A1
1000_GenomesSLC36A1 
Exome Variant ServerSLC36A1
GNOMAD BrowserENSG00000123643
Varsome BrowserSLC36A1
ACMGSLC36A1 variants
VarityQ7Z2H8
Genomic Variants (DGV)SLC36A1 [DGVbeta]
DECIPHERSLC36A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC36A1 
Mutations
ICGC Data PortalSLC36A1 
TCGA Data PortalSLC36A1 
Broad Tumor PortalSLC36A1
OASIS PortalSLC36A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC36A1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC36A1
Mutations and Diseases : HGMDSLC36A1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC36A1
DgiDB (Drug Gene Interaction Database)SLC36A1
DoCM (Curated mutations)SLC36A1
CIViC (Clinical Interpretations of Variants in Cancer)SLC36A1
Cancer3DSLC36A1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606561   
Orphanet
DisGeNETSLC36A1
MedgenSLC36A1
Genetic Testing Registry SLC36A1
NextProtQ7Z2H8 [Medical]
GENETestsSLC36A1
Target ValidationSLC36A1
Huge Navigator SLC36A1 [HugePedia]
ClinGenSLC36A1
Clinical trials, drugs, therapy
MyCancerGenomeSLC36A1
Protein Interactions : CTDSLC36A1
Pharm GKB GenePA134870308
PharosQ7Z2H8
Clinical trialSLC36A1
Miscellaneous
canSAR (ICR)SLC36A1
HarmonizomeSLC36A1
DataMed IndexSLC36A1
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC36A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:31:46 CEST 2021

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