Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC39A2 (solute carrier family 39 member 2)

Identity

Alias_namessolute carrier family 39 (zinc transporter)
Alias_symbol (synonym)ZIP2
Other alias6A1
ETI-1
ZIP-2
HGNC (Hugo) SLC39A2
LocusID (NCBI) 29986
Atlas_Id 50696
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 21467414 and ends at 21470034 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC39A2   17127
Cards
Entrez_Gene (NCBI)SLC39A2  29986  solute carrier family 39 member 2
Aliases6A1; ETI-1; ZIP-2; ZIP2
GeneCards (Weizmann)SLC39A2
Ensembl hg19 (Hinxton)ENSG00000165794 [Gene_View]  chr14:21467414-21470034 [Contig_View]  SLC39A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165794 [Gene_View]  chr14:21467414-21470034 [Contig_View]  SLC39A2 [Vega]
ICGC DataPortalENSG00000165794
TCGA cBioPortalSLC39A2
AceView (NCBI)SLC39A2
Genatlas (Paris)SLC39A2
WikiGenes29986
SOURCE (Princeton)SLC39A2
Genetics Home Reference (NIH)SLC39A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC39A2  -     chr14:21467414-21470034 +  14q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC39A2  -     14q11.2   [Description]    (hg38-Dec_2013)
EnsemblSLC39A2 - 14q11.2 [CytoView hg19]  SLC39A2 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBISLC39A2 [Mapview hg19]  SLC39A2 [Mapview hg38]
OMIM612166   
Gene and transcription
Genbank (Entrez)AF186081 AI382710 AK314974 AY029483 BC096723
RefSeq transcript (Entrez)NM_001256588 NM_014579
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_017065 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)SLC39A2
Cluster EST : UnigeneHs.175783 [ NCBI ]
CGAP (NCI)Hs.175783
Alternative Splicing GalleryENSG00000165794
Gene ExpressionSLC39A2 [ NCBI-GEO ]   SLC39A2 [ EBI - ARRAY_EXPRESS ]   SLC39A2 [ SEEK ]   SLC39A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC39A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29986
GTEX Portal (Tissue expression)SLC39A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP94
Splice isoforms : SwissVarQ9NP94
PhosPhoSitePlusQ9NP94
Domains : Interpro (EBI)ZIP   
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
Conserved Domain (NCBI)SLC39A2
DMDM Disease mutations29986
Blocks (Seattle)SLC39A2
SuperfamilyQ9NP94
Human Protein AtlasENSG00000165794
Peptide AtlasQ9NP94
HPRD15385
IPIIPI00005148   IPI01026182   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP94
IntAct (EBI)Q9NP94
FunCoupENSG00000165794
BioGRIDSLC39A2
STRING (EMBL)SLC39A2
ZODIACSLC39A2
Ontologies - Pathways
QuickGOQ9NP94
Ontology : AmiGOzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  plasma membrane  plasma membrane  integral component of plasma membrane  zinc II ion transport  cytoplasmic, membrane-bounded vesicle  zinc II ion transmembrane transport  zinc II ion transmembrane transport  zinc II ion transmembrane transport  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  zinc ion transmembrane transporter activity  plasma membrane  plasma membrane  integral component of plasma membrane  zinc II ion transport  cytoplasmic, membrane-bounded vesicle  zinc II ion transmembrane transport  zinc II ion transmembrane transport  zinc II ion transmembrane transport  
NDEx NetworkSLC39A2
Atlas of Cancer Signalling NetworkSLC39A2
Wikipedia pathwaysSLC39A2
Orthology - Evolution
OrthoDB29986
GeneTree (enSembl)ENSG00000165794
Phylogenetic Trees/Animal Genes : TreeFamSLC39A2
HOVERGENQ9NP94
HOGENOMQ9NP94
Homologs : HomoloGeneSLC39A2
Homology/Alignments : Family Browser (UCSC)SLC39A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC39A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC39A2
dbVarSLC39A2
ClinVarSLC39A2
1000_GenomesSLC39A2 
Exome Variant ServerSLC39A2
ExAC (Exome Aggregation Consortium)SLC39A2 (select the gene name)
Genetic variants : HAPMAP29986
Genomic Variants (DGV)SLC39A2 [DGVbeta]
DECIPHER (Syndromes)14:21467414-21470034  ENSG00000165794
CONAN: Copy Number AnalysisSLC39A2 
Mutations
ICGC Data PortalSLC39A2 
TCGA Data PortalSLC39A2 
Broad Tumor PortalSLC39A2
OASIS PortalSLC39A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC39A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC39A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC39A2
DgiDB (Drug Gene Interaction Database)SLC39A2
DoCM (Curated mutations)SLC39A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC39A2 (select a term)
intoGenSLC39A2
Cancer3DSLC39A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612166   
Orphanet
MedgenSLC39A2
Genetic Testing Registry SLC39A2
NextProtQ9NP94 [Medical]
TSGene29986
GENETestsSLC39A2
Huge Navigator SLC39A2 [HugePedia]
snp3D : Map Gene to Disease29986
BioCentury BCIQSLC39A2
ClinGenSLC39A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29986
Chemical/Pharm GKB GenePA38202
Clinical trialSLC39A2
Miscellaneous
canSAR (ICR)SLC39A2 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC39A2
EVEXSLC39A2
GoPubMedSLC39A2
iHOPSLC39A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:19:48 CEST 2017

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