Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC39A4 (solute carrier family 39 (zinc transporter), member 4)

Identity

Other namesAEZ
AWMS2
ZIP4
HGNC (Hugo) SLC39A4
LocusID (NCBI) 55630
Atlas_Id 50007
Location 8q24.3
Location_base_pair Starts at 145637798 and ends at 145638975 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC39A4   17129
Cards
Entrez_Gene (NCBI)SLC39A4  55630  solute carrier family 39 (zinc transporter), member 4
GeneCards (Weizmann)SLC39A4
Ensembl hg19 (Hinxton)ENSG00000147804 [Gene_View]  chr8:145637798-145638975 [Contig_View]  SLC39A4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147804 [Gene_View]  chr8:145637798-145638975 [Contig_View]  SLC39A4 [Vega]
ICGC DataPortalENSG00000147804
TCGA cBioPortalSLC39A4
AceView (NCBI)SLC39A4
Genatlas (Paris)SLC39A4
WikiGenes55630
SOURCE (Princeton)SLC39A4
Genomic and cartography
GoldenPath hg19 (UCSC)SLC39A4  -     chr8:145637798-145638975 -  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC39A4  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblSLC39A4 - 8q24.3 [CytoView hg19]  SLC39A4 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBISLC39A4 [Mapview hg19]  SLC39A4 [Mapview hg38]
OMIM201100   607059   
Gene and transcription
Genbank (Entrez)AK000334 AK000489 AK000695 AK025537 AK056900
RefSeq transcript (Entrez)NM_001280557 NM_017767 NM_130849
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_012234 NT_008046 NW_004929341
Consensus coding sequences : CCDS (NCBI)SLC39A4
Cluster EST : UnigeneHs.521934 [ NCBI ]
CGAP (NCI)Hs.521934
Alternative Splicing : Fast-db (Paris)GSHG0029954
Alternative Splicing GalleryENSG00000147804
Gene ExpressionSLC39A4 [ NCBI-GEO ]     SLC39A4 [ SEEK ]   SLC39A4 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P5W5 (Uniprot)
NextProtQ6P5W5  [Medical]
With graphics : InterProQ6P5W5
Splice isoforms : SwissVarQ6P5W5 (Swissvar)
Domains : Interpro (EBI)ZIP   
Related proteins : CluSTrQ6P5W5
Domain families : Pfam (Sanger)Zip (PF02535)   
Domain families : Pfam (NCBI)pfam02535   
DMDM Disease mutations55630
Blocks (Seattle)Q6P5W5
Human Protein AtlasENSG00000147804
Peptide AtlasQ6P5W5
HPRD06137
IPIIPI00015689   IPI00654595   IPI00956751   IPI00910147   IPI00956711   IPI00790832   IPI00983152   
Protein Interaction databases
DIP (DOE-UCLA)Q6P5W5
IntAct (EBI)Q6P5W5
FunCoupENSG00000147804
BioGRIDSLC39A4
IntegromeDBSLC39A4
STRING (EMBL)SLC39A4
Ontologies - Pathways
QuickGOQ6P5W5
Ontology : AmiGOzinc ion transmembrane transporter activity  plasma membrane  plasma membrane  cellular zinc ion homeostasis  integral component of membrane  cytoplasmic membrane-bounded vesicle  apical plasma membrane  cellular response to zinc ion starvation  recycling endosome membrane  transmembrane transport  extracellular exosome  zinc II ion transmembrane transport  
Ontology : EGO-EBIzinc ion transmembrane transporter activity  plasma membrane  plasma membrane  cellular zinc ion homeostasis  integral component of membrane  cytoplasmic membrane-bounded vesicle  apical plasma membrane  cellular response to zinc ion starvation  recycling endosome membrane  transmembrane transport  extracellular exosome  zinc II ion transmembrane transport  
Pathways : KEGGMineral absorption   
Protein Interaction DatabaseSLC39A4
DoCM (Curated mutations)SLC39A4
Wikipedia pathwaysSLC39A4
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC39A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC39A4
dbVarSLC39A4
ClinVarSLC39A4
1000_GenomesSLC39A4 
Exome Variant ServerSLC39A4
SNP (GeneSNP Utah)SLC39A4
SNP : HGBaseSLC39A4
Genetic variants : HAPMAPSLC39A4
Genomic Variants (DGV)SLC39A4 [DGVbeta]
Mutations
ICGC Data PortalSLC39A4 
TCGA Data PortalSLC39A4 
Tumor PortalSLC39A4
Somatic Mutations in Cancer : COSMICSLC39A4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)8:145637798-145638975
CONAN: Copy Number AnalysisSLC39A4 
Mutations and Diseases : HGMDSLC39A4
OMIM201100    607059   
MedgenSLC39A4
NextProtQ6P5W5 [Medical]
GENETestsSLC39A4
Disease Genetic AssociationSLC39A4
Huge Navigator SLC39A4 [HugePedia]  SLC39A4 [HugeCancerGEM]
snp3D : Map Gene to Disease55630
DGIdb (Drug Gene Interaction db)SLC39A4
General knowledge
Homologs : HomoloGeneSLC39A4
Homology/Alignments : Family Browser (UCSC)SLC39A4
Phylogenetic Trees/Animal Genes : TreeFamSLC39A4
Chemical/Protein Interactions : CTD55630
Chemical/Pharm GKB GenePA38204
Clinical trialSLC39A4
Cancer Resource (Charite)ENSG00000147804
Other databases
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
CoreMineSLC39A4
GoPubMedSLC39A4
iHOPSLC39A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 15:15:13 CEST 2015

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