Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC46A1 (solute carrier family 46 member 1)

Identity

Other namesG21
HCP1
PCFT
HGNC (Hugo) SLC46A1
LocusID (NCBI) 113235
Atlas_Id 50593
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 26721661 and ends at 26733230 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC46A1   30521
Cards
Entrez_Gene (NCBI)SLC46A1  113235  solute carrier family 46 member 1
AliasesG21; HCP1; PCFT
GeneCards (Weizmann)SLC46A1
Ensembl hg19 (Hinxton)ENSG00000076351 [Gene_View]  chr17:26721661-26733230 [Contig_View]  SLC46A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000076351 [Gene_View]  chr17:26721661-26733230 [Contig_View]  SLC46A1 [Vega]
ICGC DataPortalENSG00000076351
TCGA cBioPortalSLC46A1
AceView (NCBI)SLC46A1
Genatlas (Paris)SLC46A1
WikiGenes113235
SOURCE (Princeton)SLC46A1
Genomic and cartography
GoldenPath hg19 (UCSC)SLC46A1  -     chr17:26721661-26733230 -  17q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC46A1  -     17q11.2   [Description]    (hg38-Dec_2013)
EnsemblSLC46A1 - 17q11.2 [CytoView hg19]  SLC46A1 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBISLC46A1 [Mapview hg19]  SLC46A1 [Mapview hg38]
OMIM229050   611672   
Gene and transcription
Genbank (Entrez)AK054669 AK074161 AK097194 AK295883 AL832613
RefSeq transcript (Entrez)NM_001242366 NM_080669
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_013306 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)SLC46A1
Cluster EST : UnigeneHs.446689 [ NCBI ]
CGAP (NCI)Hs.446689
Alternative Splicing GalleryENSG00000076351
Gene ExpressionSLC46A1 [ NCBI-GEO ]   SLC46A1 [ EBI - ARRAY_EXPRESS ]   SLC46A1 [ SEEK ]   SLC46A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC46A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113235
GTEX Portal (Tissue expression)SLC46A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NT5 (Uniprot)
NextProtQ96NT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NT5
Splice isoforms : SwissVarQ96NT5 (Swissvar)
PhosPhoSitePlusQ96NT5
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    Sugar_transporter_CS   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
DMDM Disease mutations113235
Blocks (Seattle)SLC46A1
SuperfamilyQ96NT5
Human Protein AtlasENSG00000076351
Peptide AtlasQ96NT5
HPRD14715
IPIIPI00043883   IPI00550230   IPI01018362   
Protein Interaction databases
DIP (DOE-UCLA)Q96NT5
IntAct (EBI)Q96NT5
FunCoupENSG00000076351
BioGRIDSLC46A1
STRING (EMBL)SLC46A1
ZODIACSLC46A1
Ontologies - Pathways
QuickGOQ96NT5
Ontology : AmiGOfolic acid binding  cytoplasm  plasma membrane  plasma membrane  cellular iron ion homeostasis  folic acid transporter activity  folic acid transporter activity  folic acid transporter activity  cell surface  hydrogen ion transmembrane transporter activity  heme transporter activity  heme transporter activity  methotrexate transporter activity  folic acid transport  folic acid transport  heme transport  integral component of membrane  apical plasma membrane  brush border membrane  folic acid metabolic process  methotrexate transport  methotrexate transport  intestinal folate absorption  hydrogen ion transmembrane transport  folic acid import into cell  
Ontology : EGO-EBIfolic acid binding  cytoplasm  plasma membrane  plasma membrane  cellular iron ion homeostasis  folic acid transporter activity  folic acid transporter activity  folic acid transporter activity  cell surface  hydrogen ion transmembrane transporter activity  heme transporter activity  heme transporter activity  methotrexate transporter activity  folic acid transport  folic acid transport  heme transport  integral component of membrane  apical plasma membrane  brush border membrane  folic acid metabolic process  methotrexate transport  methotrexate transport  intestinal folate absorption  hydrogen ion transmembrane transport  folic acid import into cell  
Pathways : KEGGVitamin digestion and absorption    Mineral absorption   
NDEx Network
Atlas of Cancer Signalling NetworkSLC46A1
Wikipedia pathwaysSLC46A1
Orthology - Evolution
OrthoDB113235
GeneTree (enSembl)ENSG00000076351
Phylogenetic Trees/Animal Genes : TreeFamSLC46A1
Homologs : HomoloGeneSLC46A1
Homology/Alignments : Family Browser (UCSC)SLC46A1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC46A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC46A1
dbVarSLC46A1
ClinVarSLC46A1
1000_GenomesSLC46A1 
Exome Variant ServerSLC46A1
ExAC (Exome Aggregation Consortium)SLC46A1 (select the gene name)
Genetic variants : HAPMAP113235
Genomic Variants (DGV)SLC46A1 [DGVbeta]
Mutations
ICGC Data PortalSLC46A1 
TCGA Data PortalSLC46A1 
Broad Tumor PortalSLC46A1
OASIS PortalSLC46A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC46A1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch SLC46A1
DgiDB (Drug Gene Interaction Database)SLC46A1
DoCM (Curated mutations)SLC46A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC46A1 (select a term)
intoGenSLC46A1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:26721661-26733230  ENSG00000076351
CONAN: Copy Number AnalysisSLC46A1 
Mutations and Diseases : HGMDSLC46A1
OMIM229050    611672   
MedgenSLC46A1
Genetic Testing Registry SLC46A1
NextProtQ96NT5 [Medical]
TSGene113235
GENETestsSLC46A1
Huge Navigator SLC46A1 [HugePedia]
snp3D : Map Gene to Disease113235
BioCentury BCIQSLC46A1
ClinGenSLC46A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113235
Chemical/Pharm GKB GenePA162403775
Clinical trialSLC46A1
Miscellaneous
canSAR (ICR)SLC46A1 (select the gene name)
Probes
Litterature
PubMed61 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC46A1
EVEXSLC46A1
GoPubMedSLC46A1
iHOPSLC46A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 9 19:30:17 CEST 2016

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