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SLFN12 (schlafen family member 12)

Identity

Alias_symbol (synonym)FLJ10260
Other aliasSLFN3
HGNC (Hugo) SLFN12
LocusID (NCBI) 55106
Atlas_Id 40581
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 33737941 and ends at 33760195 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLFN12   25500
Cards
Entrez_Gene (NCBI)SLFN12  55106  schlafen family member 12
AliasesSLFN3
GeneCards (Weizmann)SLFN12
Ensembl hg19 (Hinxton)ENSG00000172123 [Gene_View]  chr17:33737941-33760195 [Contig_View]  SLFN12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172123 [Gene_View]  chr17:33737941-33760195 [Contig_View]  SLFN12 [Vega]
ICGC DataPortalENSG00000172123
TCGA cBioPortalSLFN12
AceView (NCBI)SLFN12
Genatlas (Paris)SLFN12
WikiGenes55106
SOURCE (Princeton)SLFN12
Genetics Home Reference (NIH)SLFN12
Genomic and cartography
GoldenPath hg19 (UCSC)SLFN12  -     chr17:33737941-33760195 -  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLFN12  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblSLFN12 - 17q12 [CytoView hg19]  SLFN12 - 17q12 [CytoView hg38]
Mapping of homologs : NCBISLFN12 [Mapview hg19]  SLFN12 [Mapview hg38]
OMIM614955   
Gene and transcription
Genbank (Entrez)AK001122 AK291826 BC035605 BX647081 CB045471
RefSeq transcript (Entrez)NM_001289009 NM_018042
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)SLFN12
Cluster EST : UnigeneHs.663548 [ NCBI ]
CGAP (NCI)Hs.663548
Alternative Splicing GalleryENSG00000172123
Gene ExpressionSLFN12 [ NCBI-GEO ]   SLFN12 [ EBI - ARRAY_EXPRESS ]   SLFN12 [ SEEK ]   SLFN12 [ MEM ]
Gene Expression Viewer (FireBrowse)SLFN12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55106
GTEX Portal (Tissue expression)SLFN12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYM2
Splice isoforms : SwissVarQ8IYM2
PhosPhoSitePlusQ8IYM2
Domains : Interpro (EBI)Schlafen    Schlafen_AAA_dom   
Domain families : Pfam (Sanger)AlbA_2 (PF04326)   
Domain families : Pfam (NCBI)pfam04326   
Conserved Domain (NCBI)SLFN12
DMDM Disease mutations55106
Blocks (Seattle)SLFN12
SuperfamilyQ8IYM2
Human Protein AtlasENSG00000172123
Peptide AtlasQ8IYM2
HPRD08543
IPIIPI00217804   IPI00795706   IPI00793881   IPI00792017   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYM2
IntAct (EBI)Q8IYM2
FunCoupENSG00000172123
BioGRIDSLFN12
STRING (EMBL)SLFN12
ZODIACSLFN12
Ontologies - Pathways
QuickGOQ8IYM2
Ontology : AmiGOATP binding  
Ontology : EGO-EBIATP binding  
NDEx NetworkSLFN12
Atlas of Cancer Signalling NetworkSLFN12
Wikipedia pathwaysSLFN12
Orthology - Evolution
OrthoDB55106
GeneTree (enSembl)ENSG00000172123
Phylogenetic Trees/Animal Genes : TreeFamSLFN12
HOVERGENQ8IYM2
HOGENOMQ8IYM2
Homologs : HomoloGeneSLFN12
Homology/Alignments : Family Browser (UCSC)SLFN12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLFN12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLFN12
dbVarSLFN12
ClinVarSLFN12
1000_GenomesSLFN12 
Exome Variant ServerSLFN12
ExAC (Exome Aggregation Consortium)SLFN12 (select the gene name)
Genetic variants : HAPMAP55106
Genomic Variants (DGV)SLFN12 [DGVbeta]
DECIPHER (Syndromes)17:33737941-33760195  ENSG00000172123
CONAN: Copy Number AnalysisSLFN12 
Mutations
ICGC Data PortalSLFN12 
TCGA Data PortalSLFN12 
Broad Tumor PortalSLFN12
OASIS PortalSLFN12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLFN12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLFN12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLFN12
DgiDB (Drug Gene Interaction Database)SLFN12
DoCM (Curated mutations)SLFN12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLFN12 (select a term)
intoGenSLFN12
Cancer3DSLFN12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614955   
Orphanet
MedgenSLFN12
Genetic Testing Registry SLFN12
NextProtQ8IYM2 [Medical]
TSGene55106
GENETestsSLFN12
Huge Navigator SLFN12 [HugePedia]
snp3D : Map Gene to Disease55106
BioCentury BCIQSLFN12
ClinGenSLFN12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55106
Chemical/Pharm GKB GenePA144596359
Clinical trialSLFN12
Miscellaneous
canSAR (ICR)SLFN12 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLFN12
EVEXSLFN12
GoPubMedSLFN12
iHOPSLFN12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:01 CEST 2017

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