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SOD2 (superoxide dismutase 2)

Identity

Alias (NCBI)GClnc1
IPO-B
IPOB
MNSOD
MVCD6
Mn-SOD
HGNC (Hugo) SOD2
HGNC Alias symbGClnc1
HGNC Alias namegastric cancer–associated lncRNA 1
HGNC Previous namesuperoxide dismutase 2, mitochondrial
LocusID (NCBI) 6648
Atlas_Id 42353
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 159669069 and ends at 159726950 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD74 (5q32) / SOD2 (6q25.3)KIF5C (2q23.1) / SOD2 (6q25.3)SOD2 (6q25.3) / ANXA2 (15q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  Del(6q) in Chronic lymphocytic leukaemia (CLL)


External links

Nomenclature
HGNC (Hugo)SOD2   11180
Cards
Entrez_Gene (NCBI)SOD2    superoxide dismutase 2
AliasesGClnc1; IPO-B; IPOB; MNSOD; 
MVCD6; Mn-SOD
GeneCards (Weizmann)SOD2
Ensembl hg19 (Hinxton)ENSG00000112096 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112096 [Gene_View]  ENSG00000112096 [Sequence]  chr6:159669069-159726950 [Contig_View]  SOD2 [Vega]
ICGC DataPortalENSG00000112096
TCGA cBioPortalSOD2
AceView (NCBI)SOD2
Genatlas (Paris)SOD2
SOURCE (Princeton)SOD2
Genetics Home Reference (NIH)SOD2
Genomic and cartography
GoldenPath hg38 (UCSC)SOD2  -     chr6:159669069-159726950 -  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOD2  -     6q25.3   [Description]    (hg19-Feb_2009)
GoldenPathSOD2 - 6q25.3 [CytoView hg19]  SOD2 - 6q25.3 [CytoView hg38]
ImmunoBaseENSG00000112096
Genome Data Viewer NCBISOD2 [Mapview hg19]  
OMIM147460   612634   
Gene and transcription
Genbank (Entrez)AA126703 AK097395 AK296809 AK304766 AK313082
RefSeq transcript (Entrez)NM_000636 NM_001024465 NM_001024466 NM_001322814 NM_001322815 NM_001322816 NM_001322817 NM_001322819 NM_001322820
Consensus coding sequences : CCDS (NCBI)SOD2
Gene ExpressionSOD2 [ NCBI-GEO ]   SOD2 [ EBI - ARRAY_EXPRESS ]   SOD2 [ SEEK ]   SOD2 [ MEM ]
Gene Expression Viewer (FireBrowse)SOD2 [ Firebrowse - Broad ]
GenevisibleExpression of SOD2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6648
GTEX Portal (Tissue expression)SOD2
Human Protein AtlasENSG00000112096-SOD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SOD2
Human Protein Atlas [tissue]ENSG00000112096-SOD2 [tissue]
HPRD00938
Protein Interaction databases
BioGRIDSOD2
STRING (EMBL)SOD2
ZODIACSOD2
Ontologies - Pathways
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSOD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:32:36 CEST 2021

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