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SSX1 (synovial sarcoma, X breakpoint 1)

Identity

Other namesCT5.1
SSRC
HGNC (Hugo) SSX1
LocusID (NCBI) 6756
Atlas_Id 87
Location Xp11.23
Location_base_pair Starts at 48114752 and ends at 48126879 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Breakpoints

 

External links

Nomenclature
HGNC (Hugo)SSX1   11335
Cards
Entrez_Gene (NCBI)SSX1  6756  synovial sarcoma, X breakpoint 1
GeneCards (Weizmann)SSX1
Ensembl hg19 (Hinxton)ENSG00000126752 [Gene_View]  chrX:48114752-48126879 [Contig_View]  SSX1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000126752 [Gene_View]  chrX:48114752-48126879 [Contig_View]  SSX1 [Vega]
ICGC DataPortalENSG00000126752
TCGA cBioPortalSSX1
AceView (NCBI)SSX1
Genatlas (Paris)SSX1
WikiGenes6756
SOURCE (Princeton)SSX1
Genomic and cartography
GoldenPath hg19 (UCSC)SSX1  -     chrX:48114752-48126879 +  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SSX1  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblSSX1 - Xp11.23 [CytoView hg19]  SSX1 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBISSX1 [Mapview hg19]  SSX1 [Mapview hg38]
OMIM300813   312820   
Gene and transcription
Genbank (Entrez)BC001003 BC125151 BC128611 BC133693 BC150487
RefSeq transcript (Entrez)NM_001278691 NM_005635
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_012528 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)SSX1
Cluster EST : UnigeneHs.434142 [ NCBI ]
CGAP (NCI)Hs.434142
Alternative Splicing : Fast-db (Paris)GSHG0031507
Alternative Splicing GalleryENSG00000126752
Gene ExpressionSSX1 [ NCBI-GEO ]     SSX1 [ SEEK ]   SSX1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16384 (Uniprot)
NextProtQ16384  [Medical]  [Publications]
With graphics : InterProQ16384
Splice isoforms : SwissVarQ16384 (Swissvar)
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)   
Domains : Interpro (EBI)Krueppel-associated_box    Krueppel-associated_box-rel    SSX    SSXRD_motif   
Related proteins : CluSTrQ16384
Domain families : Pfam (Sanger)SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
DMDM Disease mutations6756
Blocks (Seattle)Q16384
Human Protein AtlasENSG00000126752
Peptide AtlasQ16384
HPRD02428
IPIIPI00001519   
Protein Interaction databases
DIP (DOE-UCLA)Q16384
IntAct (EBI)Q16384
FunCoupENSG00000126752
BioGRIDSSX1
IntegromeDBSSX1
STRING (EMBL)SSX1
Ontologies - Pathways
QuickGOQ16384
Ontology : AmiGOnucleic acid binding  transcription corepressor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBInucleic acid binding  transcription corepressor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
Pathways : KEGGTranscriptional misregulation in cancer   
Protein Interaction DatabaseSSX1
DoCM (Curated mutations)SSX1
Wikipedia pathwaysSSX1
Gene fusion - Rearrangements
Rearrangement : COSMICSS18L1 [20q13.33]  -  SSX1 [Xp11.23]  [fusion_1123]  [fusion_1124]
Rearrangement : COSMICSS18 [18q11.2]  -  SSX1 [Xp11.23]  [fusion_499]  [fusion_504]  [fusion_505]  [fusion_506]  [fusion_513]  [fusion_514]  [fusion_515]  [fusion_519]  [fusion_520]  [fusion_521]  [fusion_527]  [fusion_528]  [fusion_577]  [fusion_581]
Rearrangement : COSMICSSX1 [Xp11.23]  -  SS18 [18q11.2]  [fusion_575]  [fusion_578]
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerSSX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSX1
dbVarSSX1
ClinVarSSX1
1000_GenomesSSX1 
Exome Variant ServerSSX1
SNP (GeneSNP Utah)SSX1
SNP : HGBaseSSX1
Genetic variants : HAPMAPSSX1
Genomic Variants (DGV)SSX1 [DGVbeta]
Mutations
ICGC Data PortalSSX1 
TCGA Data PortalSSX1 
Tumor PortalSSX1
Cancer Gene: CensusSSX1 
Somatic Mutations in Cancer : COSMICSSX1 
LOVD (Leiden Open Variation Database)genes/SSX1
LOVD (Leiden Open Variation Database)genes/SSX1
LOVD (Leiden Open Variation Database)genes/SSX1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:48114752-48126879
CONAN: Copy Number AnalysisSSX1 
Mutations and Diseases : HGMDSSX1
OMIM300813    312820   
MedgenSSX1
NextProtQ16384 [Medical]
GENETestsSSX1
Disease Genetic AssociationSSX1
Huge Navigator SSX1 [HugePedia]  SSX1 [HugeCancerGEM]
snp3D : Map Gene to Disease6756
DGIdb (Drug Gene Interaction db)SSX1
BioCentury BCIQSSX1
General knowledge
Homologs : HomoloGeneSSX1
Homology/Alignments : Family Browser (UCSC)SSX1
Phylogenetic Trees/Animal Genes : TreeFamSSX1
Chemical/Protein Interactions : CTD6756
Chemical/Pharm GKB GenePA36159
Clinical trialSSX1
Cancer Resource (Charite)ENSG00000126752
Other databases
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
CoreMineSSX1
GoPubMedSSX1
iHOPSSX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 29 19:23:44 CEST 2015

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