Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SSX1 (synovial sarcoma, X breakpoint 1)

Identity

Other namesCT5.1
SSRC
HGNC (Hugo) SSX1
LocusID (NCBI) 6756
Location Xp11.23
Location_base_pair Starts at 48114797 and ends at 48126879 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Breakpoints

 

External links

Nomenclature
HGNC (Hugo)SSX1   11335
Entrez_Gene (NCBI)SSX1  6756  synovial sarcoma, X breakpoint 1
Cards
GeneCards (Weizmann)SSX1
Ensembl (Hinxton)ENSG00000126752 [Gene_View]  chrX:48114797-48126879 [Contig_View]  SSX1 [Vega]
AceView (NCBI)SSX1
Genatlas (Paris)SSX1
SOURCE (Stanford)NM_005635
Genomic and cartography
GoldenPath (UCSC)SSX1  -  Xp11.23   chrX:48114797-48126879 +  Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblSSX1 - Xp11.23 [CytoView]
Mapping of homologs : NCBISSX1 [Mapview]
OMIM312820   
Gene and transcription
Genbank (Entrez)BC001003 BC125151 BC128611 BC133693 BC150487
RefSeq transcript (SRS)NM_005635
RefSeq transcript (Entrez)NM_005635
RefSeq genomic (SRS)AC_000155 NC_000023 NC_018934 NG_012528 NT_079573 NW_001842362 NW_004070880 NW_004078119
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_012528 NT_079573 NW_001842362 NW_004070880 NW_004078119
Consensus coding sequences : CCDS (NCBI)SSX1
Cluster EST : UnigeneHs.434142 [ SRS ] Hs.434142 [ NCBI ]
CGAP (NCI)Hs.434142
Alternative Splicing : Fast-db (Paris)GSHG0031507
Alternative Splicing GalleryENSG00000126752
Gene ExpressionSSX1 [ NCBI-GEO ]   SSX1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16384 (SRS) Q16384 (Uniprot)
NextProtQ16384
With graphics : InterProQ16384
Splice isoforms : SwissVarQ16384(Swissvar)
Domaine pattern : Prosite (SRS)KRAB_RELATED (PS50806)   
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)   
Domains : Interpro (SRS)Krueppel-associated_box    Krueppel-associated_box-rel    SSXRD_motif   
Domains : Interpro (EBI)Krueppel-associated_box    Krueppel-associated_box-rel    SSXRD_motif   
Related proteins : CluSTrQ16384
Domain families : Pfam (SRS)SSXRD (PF09514)   
Domain families : Pfam (Sanger)SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
DMDM6756
Blocks (Seattle)Q16384
Human Protein AtlasENSG00000126752
HPRD02428
IPIIPI00001519   
Protein Interaction databases
DIP (DOE-UCLA)Q16384
IntAct (EBI)Q16384
FunCoupENSG00000126752
REACTOMESSX1
Protein Interaction Database6756
BioGRIDSSX1
InParanoidQ16384
Interologous Interaction database Q16384
IntegromeDBSSX1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SSX1
SNP (GeneSNP Utah)SSX1
SNP : HGBaseSSX1
Genetic variants : HAPMAPSSX1
Cancer Gene: CensusSSX1 
Somatic Mutations in Cancer : COSMICSSX1 
CONAN: Copy Number AnalysisSSX1 
Rearrangement : COSMICSS18L1 [20q13.33]  -  SSX1 [Xp11.23]
Rearrangement : COSMICSS18 [18q11.2]  -  SSX1 [Xp11.23]
Rearrangement : COSMICSSX1 [Xp11.23]  -  SS18 [18q11.2]
Translocation Breakpoints in Cancer : TICdbSSX1 
Mutations and Diseases : HGMDSSX1
OMIM312820   
GENETests312820   
Disease Genetic AssociationSSX1
Huge Navigator SSX1 [HugePedia]  SSX1 [HugeCancerGEM]
Genomic VariantsSSX1  SSX1 [DGVbeta]
snp3D : Map Gene to Disease6756
General knowledge
Homologs : HomoloGeneSSX1
Homology/Alignments : Family Browser (UCSC)SSX1
Phylogenetic Trees/Animal Genes : TreeFamSSX1
Chemical/Protein Interactions : CTD6756
Chemical/Pharm GKB GenePA36159
Clinical trialSSX1
Cancer Resource (Charite)ENSG00000126752
Ontology : AmiGOnucleic acid binding  transcription corepressor activity  nucleus  transcription, DNA-dependent  regulation of transcription, DNA-dependent  
Ontology : EGO-EBInucleic acid binding  transcription corepressor activity  nucleus  transcription, DNA-dependent  regulation of transcription, DNA-dependent  
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
PubGeneSSX1
iHOPSSX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:39:12 CEST 2013
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