Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA
Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

Donate (in US Dollars)

SSX1 (synovial sarcoma, X breakpoint 1)


Other namesCT5.1
HGNC (Hugo) SSX1
LocusID (NCBI) 6756
Location Xp11.23
Location_base_pair Starts at 48114752 and ends at 48126879 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute





Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945 MedulloblastomaID5065 rhabID5004 bladID5001 colonID5006

External links

HGNC (Hugo)SSX1   11335
Entrez_Gene (NCBI)SSX1  6756  synovial sarcoma, X breakpoint 1
GeneCards (Weizmann)SSX1
Ensembl hg19 (Hinxton)ENSG00000126752 [Gene_View]  chrX:48114752-48126879 [Contig_View]  SSX1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000126752 [Gene_View]  chrX:48114752-48126879 [Contig_View]  SSX1 [Vega]
ICGC DataPortalENSG00000126752
AceView (NCBI)SSX1
Genatlas (Paris)SSX1
SOURCE (Princeton)SSX1
Genomic and cartography
GoldenPath hg19 (UCSC)SSX1  -     chrX:48114752-48126879 +  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SSX1  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblSSX1 - Xp11.23 [CytoView hg19]  SSX1 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBISSX1 [Mapview hg19]  SSX1 [Mapview hg38]
OMIM300813   312820   
Gene and transcription
Genbank (Entrez)BC001003 BC125151 BC128611 BC133693 BC150487
RefSeq transcript (Entrez)NM_001278691 NM_005635
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_012528 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)SSX1
Cluster EST : UnigeneHs.434142 [ NCBI ]
CGAP (NCI)Hs.434142
Alternative Splicing : Fast-db (Paris)GSHG0031507
Alternative Splicing GalleryENSG00000126752
Gene ExpressionSSX1 [ NCBI-GEO ]     SSX1 [ SEEK ]   SSX1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16384 (Uniprot)
NextProtQ16384  [Medical]
With graphics : InterProQ16384
Splice isoforms : SwissVarQ16384 (Swissvar)
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)   
Domains : Interpro (EBI)Krueppel-associated_box    Krueppel-associated_box-rel    SSX    SSXRD_motif   
Related proteins : CluSTrQ16384
Domain families : Pfam (Sanger)SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
DMDM Disease mutations6756
Blocks (Seattle)Q16384
Human Protein AtlasENSG00000126752
Peptide AtlasQ16384
Protein Interaction databases
IntAct (EBI)Q16384
Ontologies - Pathways
Ontology : AmiGOnucleic acid binding  transcription corepressor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBInucleic acid binding  transcription corepressor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of nucleic acid-templated transcription  
Pathways : KEGGTranscriptional misregulation in cancer   
Protein Interaction DatabaseSSX1
DoCM (Curated mutations)SSX1
Wikipedia pathwaysSSX1
Gene fusion - rearrangements
Rearrangement : COSMICSSX1 [Xp11.23]  -  SS18 [18q11.2]
Polymorphisms : SNP, variants
NCBI Variation ViewerSSX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSX1
Exome Variant ServerSSX1
SNP (GeneSNP Utah)SSX1
Genetic variants : HAPMAPSSX1
Genomic Variants (DGV)SSX1 [DGVbeta]
ICGC Data PortalENSG00000126752 
Somatic Mutations in Cancer : COSMICSSX1 
CONAN: Copy Number AnalysisSSX1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)X:48114752-48126879
Mutations and Diseases : HGMDSSX1
OMIM300813    312820   
NextProtQ16384 [Medical]
Disease Genetic AssociationSSX1
Huge Navigator SSX1 [HugePedia]  SSX1 [HugeCancerGEM]
snp3D : Map Gene to Disease6756
DGIdb (Drug Gene Interaction db)SSX1
General knowledge
Homologs : HomoloGeneSSX1
Homology/Alignments : Family Browser (UCSC)SSX1
Phylogenetic Trees/Animal Genes : TreeFamSSX1
Chemical/Protein Interactions : CTD6756
Chemical/Pharm GKB GenePA36159
Clinical trialSSX1
Cancer Resource (Charite)ENSG00000126752
Other databases
PubMed39 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:30:58 CET 2015

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us