SSX1 (synovial sarcoma, X breakpoint 1)

Identity

Other names	MGC150425
	MGC5162
	SSRC
HGNC	SSX1
Location	Xp11.23
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

Breakpoints

External links

	Nomenclature
HGNC	SSX1   11335
Entrez_Gene	SSX1  6756  synovial sarcoma, X breakpoint 1
	Cards
GeneCards	SSX1
Ensembl	SSX1 [Search_View]   ENSG00000126752 [Gene_View]
Genatlas	SSX1
GeneLynx	SSX1
eGenome	SSX1
euGene	6756
	Genomic and cartography
GoldenPath	SSX1  -  Xp11.23   chrX:47999741-48011823 +  Xp11.23   [Description]    (hg18-March_2006)
Ensembl	SSX1 - Xp11.23 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	SSX1
	Gene and transcription
Genbank	BC001003 [ ENTREZ ]
Genbank	BC125151 [ ENTREZ ]
Genbank	BC128611 [ ENTREZ ]
Genbank	BC133693 [ ENTREZ ]
Genbank	BC148313 [ ENTREZ ]
RefSeq	NM_005635 [ SRS ]    NM_005635 [ ENTREZ ]
RefSeq	AC_000155 [ SRS ]    AC_000155 [ ENTREZ ]
RefSeq	NC_000023 [ SRS ]    NC_000023 [ ENTREZ ]
RefSeq	NT_079573 [ SRS ]    NT_079573 [ ENTREZ ]
RefSeq	NW_001842362 [ SRS ]    NW_001842362 [ ENTREZ ]
AceView	SSX1 AceView - NCBI
Unigene	Hs.713144 [ SRS ]    Hs.713144 [ NCBI ]     HS713144 [ spliceNest ]
Fast-db	7530 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q16384 [ SRS]    Q16384 [ EXPASY ]     Q16384 [ INTERPRO ]     Q16384 [ UNIPROT ]
Prosite	PS50806 KRAB_RELATED [ SRS ]    PS50806 KRAB_RELATED [ Expasy ]
Interpro	IPR001909 Krueppel-associated_box [ SRS ]    IPR001909 Krueppel-associated_box [ EBI ]
Interpro	IPR003655 Krueppel-associated_box-rel [ SRS ]    IPR003655 Krueppel-associated_box-rel [ EBI ]
CluSTr	Q16384
Pfam	PF01352 KRAB [ SRS ]    PF01352 KRAB [ Sanger ]    pfam01352 [ NCBI-CDD ]
Smart	SM00349 KRAB [EMBL]
Blocks	Q16384
HPRD	02428
	Protein Interaction databases
DIP	Q16384
IntAct	Q16384
	Polymorphism : SNP, mutations, diseases
OMIM	312820    [ map ]
GENECLINICS	312820
SNP	SSX1 [dbSNP-NCBI]
SNP	NM_005635 [SNP-NCI]
SNP	SSX1 [GeneSNPs - Utah]  SSX1] [HGBASE - SRS]
HAPMAP	SSX1 [HAPMAP]
COSMIC	SSX1 [Somatic mutation (COSMIC-CGP-Sanger)]
TICdb	nucleic [Translocation breakpoints In Cancer]
HGMD	SSX1
	General knowledge
Family Browser	SSX1 [UCSC Family Browser]
SOURCE	NM_005635
SMD	Hs.713144
SAGE	Hs.713144
GO	nucleic acid binding [Amigo]  nucleic acid binding
GO	transcription corepressor activity [Amigo]  transcription corepressor activity
GO	intracellular [Amigo]  intracellular
GO	nucleus [Amigo]  nucleus
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
PubGene	SSX1
TreeFam	SSX1
CTD	6756 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	SSX1 Related clones (RZPD - Berlin)
	PubMed
PubMed	18 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:33:30 2008