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SSX1 (synovial sarcoma, X breakpoint 1)

Identity

Other namesCT5.1
SSRC
HGNC (Hugo) SSX1
LocusID (NCBI) 6756
Location Xp11.23
Location_base_pair Starts at 48114752 and ends at 48126879 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Breakpoints

 

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945 MedulloblastomaID5065 rhab5004 rhabID5004 blad5001

External links

Nomenclature
HGNC (Hugo)SSX1   11335
Cards
Entrez_Gene (NCBI)SSX1  6756  synovial sarcoma, X breakpoint 1
GeneCards (Weizmann)SSX1
Ensembl (Hinxton)ENSG00000126752 [Gene_View]  chrX:48114752-48126879 [Contig_View]  SSX1 [Vega]
ICGC DataPortalENSG00000126752
AceView (NCBI)SSX1
Genatlas (Paris)SSX1
WikiGenes6756
SOURCE (Princeton)NM_001278691 NM_005635
Genomic and cartography
GoldenPath (UCSC)SSX1  -  Xp11.23   chrX:48114752-48126879 +  Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblSSX1 - Xp11.23 [CytoView]
Mapping of homologs : NCBISSX1 [Mapview]
OMIM300813   312820   
Gene and transcription
Genbank (Entrez)BC001003 BC125151 BC128611 BC133693 BC150487
RefSeq transcript (Entrez)NM_001278691 NM_005635
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_012528 NT_079573 NW_001842362 NW_004929439
Consensus coding sequences : CCDS (NCBI)SSX1
Cluster EST : UnigeneHs.434142 [ NCBI ]
CGAP (NCI)Hs.434142
Alternative Splicing : Fast-db (Paris)GSHG0031507
Alternative Splicing GalleryENSG00000126752
Gene ExpressionSSX1 [ NCBI-GEO ]     SSX1 [ SEEK ]   SSX1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16384 (Uniprot)
NextProtQ16384  [Medical]
With graphics : InterProQ16384
Splice isoforms : SwissVarQ16384 (Swissvar)
Domaine pattern : Prosite (Expaxy)KRAB_RELATED (PS50806)   
Domains : Interpro (EBI)Krueppel-associated_box    Krueppel-associated_box-rel    SSX    SSXRD_motif   
Related proteins : CluSTrQ16384
Domain families : Pfam (Sanger)SSXRD (PF09514)   
Domain families : Pfam (NCBI)pfam09514   
Domain families : Smart (EMBL)KRAB (SM00349)  
DMDM Disease mutations6756
Blocks (Seattle)Q16384
Human Protein AtlasENSG00000126752
Peptide AtlasQ16384
HPRD02428
IPIIPI00001519   
Protein Interaction databases
DIP (DOE-UCLA)Q16384
IntAct (EBI)Q16384
FunCoupENSG00000126752
BioGRIDSSX1
IntegromeDBSSX1
STRING (EMBL)SSX1
Ontologies - Pathways
QuickGOQ16384
Ontology : AmiGOnucleic acid binding  transcription corepressor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleic acid binding  transcription corepressor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Pathways : KEGGTranscriptional misregulation in cancer   
Protein Interaction DatabaseSSX1
Wikipedia pathwaysSSX1
Gene fusion - rearrangments
Rearrangement : COSMICSSX1 [Xp11.23]  -  SS18 [18q11.2]
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SSX1
SNP (GeneSNP Utah)SSX1
SNP : HGBaseSSX1
Genetic variants : HAPMAPSSX1
1000_GenomesSSX1 
ICGC programENSG00000126752 
Cancer Gene: CensusSSX1 
CONAN: Copy Number AnalysisSSX1 
Somatic Mutations in Cancer : COSMICSSX1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
DECIPHER (Syndromes)X:48114752-48126879
Mutations and Diseases : HGMDSSX1
OMIM300813    312820   
MedgenSSX1
GENETestsSSX1
Disease Genetic AssociationSSX1
Huge Navigator SSX1 [HugePedia]  SSX1 [HugeCancerGEM]
Genomic VariantsSSX1  SSX1 [DGVbeta]
Exome VariantSSX1
dbVarSSX1
ClinVarSSX1
snp3D : Map Gene to Disease6756
General knowledge
Homologs : HomoloGeneSSX1
Homology/Alignments : Family Browser (UCSC)SSX1
Phylogenetic Trees/Animal Genes : TreeFamSSX1
Chemical/Protein Interactions : CTD6756
Chemical/Pharm GKB GenePA36159
Clinical trialSSX1
Cancer Resource (Charite)ENSG00000126752
Other databases
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
CoreMineSSX1
GoPubMedSSX1
iHOPSSX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:59:16 CET 2014

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