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ST13 (ST13, Hsp70 interacting protein)

Identity

Alias_namessuppression of tumorigenicity 13 (colon carcinoma) (Hsp70-interacting protein)
Alias_symbol (synonym)SNC6
HSPABP1
HIP
P48
FAM10A1
Other aliasAAG2
FAM10A4
HOP
HSPABP
PRO0786
HGNC (Hugo) ST13
LocusID (NCBI) 6767
Atlas_Id 42416
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 40824535 and ends at 40857008 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ST13 (22q13.2) / SKIV2L2 (5q11.2)YTHDC2 (5q22.2) / ST13 (22q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ST13   11343
Cards
Entrez_Gene (NCBI)ST13  6767  ST13, Hsp70 interacting protein
AliasesAAG2; FAM10A1; FAM10A4; HIP; 
HOP; HSPABP; HSPABP1; P48; PRO0786; SNC6
GeneCards (Weizmann)ST13
Ensembl hg19 (Hinxton)ENSG00000100380 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100380 [Gene_View]  chr22:40824535-40857008 [Contig_View]  ST13 [Vega]
ICGC DataPortalENSG00000100380
TCGA cBioPortalST13
AceView (NCBI)ST13
Genatlas (Paris)ST13
WikiGenes6767
SOURCE (Princeton)ST13
Genetics Home Reference (NIH)ST13
Genomic and cartography
GoldenPath hg38 (UCSC)ST13  -     chr22:40824535-40857008 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST13  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblST13 - 22q13.2 [CytoView hg19]  ST13 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBIST13 [Mapview hg19]  ST13 [Mapview hg38]
OMIM606796   
Gene and transcription
Genbank (Entrez)AF116650 AK130770 AK303530 AK312399 AK316155
RefSeq transcript (Entrez)NM_001278589 NM_003932
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ST13
Cluster EST : UnigeneHs.712713 [ NCBI ]
CGAP (NCI)Hs.712713
Alternative Splicing GalleryENSG00000100380
Gene ExpressionST13 [ NCBI-GEO ]   ST13 [ EBI - ARRAY_EXPRESS ]   ST13 [ SEEK ]   ST13 [ MEM ]
Gene Expression Viewer (FireBrowse)ST13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6767
GTEX Portal (Tissue expression)ST13
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50502   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP50502  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP50502
Splice isoforms : SwissVarP50502
PhosPhoSitePlusP50502
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)STI1_HS-bd    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13181   
Domain families : Smart (EMBL)STI1 (SM00727)  TPR (SM00028)  
Conserved Domain (NCBI)ST13
DMDM Disease mutations6767
Blocks (Seattle)ST13
PDB (SRS)1UZS   
PDB (PDBSum)1UZS   
PDB (IMB)1UZS   
PDB (RSDB)1UZS   
Structural Biology KnowledgeBase1UZS   
SCOP (Structural Classification of Proteins)1UZS   
CATH (Classification of proteins structures)1UZS   
SuperfamilyP50502
Human Protein AtlasENSG00000100380
Peptide AtlasP50502
HPRD08426
IPIIPI00032826   IPI01009506   IPI01014177   IPI00383365   IPI00892885   IPI00892521   
Protein Interaction databases
DIP (DOE-UCLA)P50502
IntAct (EBI)P50502
FunCoupENSG00000100380
BioGRIDST13
STRING (EMBL)ST13
ZODIACST13
Ontologies - Pathways
QuickGOP50502
Ontology : AmiGOprotein binding  cytoplasm  cytosol  protein folding  protein domain specific binding  Hsp70 protein binding  protein binding, bridging  protein complex binding  dATP binding  identical protein binding  protein complex  protein dimerization activity  unfolded protein binding  chaperone binding  protein homooligomerization  negative regulation of protein refolding  extracellular exosome  chaperone cofactor-dependent protein refolding  
Ontology : EGO-EBIprotein binding  cytoplasm  cytosol  protein folding  protein domain specific binding  Hsp70 protein binding  protein binding, bridging  protein complex binding  dATP binding  identical protein binding  protein complex  protein dimerization activity  unfolded protein binding  chaperone binding  protein homooligomerization  negative regulation of protein refolding  extracellular exosome  chaperone cofactor-dependent protein refolding  
NDEx NetworkST13
Atlas of Cancer Signalling NetworkST13
Wikipedia pathwaysST13
Orthology - Evolution
OrthoDB6767
GeneTree (enSembl)ENSG00000100380
Phylogenetic Trees/Animal Genes : TreeFamST13
HOVERGENP50502
HOGENOMP50502
Homologs : HomoloGeneST13
Homology/Alignments : Family Browser (UCSC)ST13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST13
dbVarST13
ClinVarST13
1000_GenomesST13 
Exome Variant ServerST13
ExAC (Exome Aggregation Consortium)ST13 (select the gene name)
Genetic variants : HAPMAP6767
Genomic Variants (DGV)ST13 [DGVbeta]
DECIPHERST13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST13 
Mutations
ICGC Data PortalST13 
TCGA Data PortalST13 
Broad Tumor PortalST13
OASIS PortalST13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDST13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ST13
DgiDB (Drug Gene Interaction Database)ST13
DoCM (Curated mutations)ST13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ST13 (select a term)
intoGenST13
Cancer3DST13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606796   
Orphanet
MedgenST13
Genetic Testing Registry ST13
NextProtP50502 [Medical]
TSGene6767
GENETestsST13
Huge Navigator ST13 [HugePedia]
snp3D : Map Gene to Disease6767
BioCentury BCIQST13
ClinGenST13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6767
Chemical/Pharm GKB GenePA36167
Clinical trialST13
Miscellaneous
canSAR (ICR)ST13 (select the gene name)
Probes
Litterature
PubMed67 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineST13
EVEXST13
GoPubMedST13
iHOPST13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:39:17 CEST 2017

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