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ST13 (ST13 Hsp70 interacting protein)

Identity

Alias (NCBI)AAG2
FAM10A1
FAM10A4
HIP
HOP
HSPABP
HSPABP1
P48
PRO0786
SNC6
HGNC (Hugo) ST13
HGNC Alias symbSNC6
HSPABP1
HIP
P48
FAM10A1
HGNC Alias nameprogesterone receptor-associated p48 protein
HGNC Previous namesuppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein)
 ST13, Hsp70 interacting protein
LocusID (NCBI) 6767
Atlas_Id 42416
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 40824535 and ends at 40856639 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ST13 (22q13.2)::SKIV2L2 (5q11.2)YTHDC2 (5q22.2)::ST13 (22q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ST13   11343
Cards
Entrez_Gene (NCBI)ST13    ST13 Hsp70 interacting protein
AliasesAAG2; FAM10A1; FAM10A4; HIP; 
HOP; HSPABP; HSPABP1; P48; PRO0786; SNC6
GeneCards (Weizmann)ST13
Ensembl hg19 (Hinxton)ENSG00000100380 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100380 [Gene_View]  ENSG00000100380 [Sequence]  chr22:40824535-40856639 [Contig_View]  ST13 [Vega]
ICGC DataPortalENSG00000100380
TCGA cBioPortalST13
AceView (NCBI)ST13
Genatlas (Paris)ST13
SOURCE (Princeton)ST13
Genetics Home Reference (NIH)ST13
Genomic and cartography
GoldenPath hg38 (UCSC)ST13  -     chr22:40824535-40856639 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ST13  -     22q13.2   [Description]    (hg19-Feb_2009)
GoldenPathST13 - 22q13.2 [CytoView hg19]  ST13 - 22q13.2 [CytoView hg38]
ImmunoBaseENSG00000100380
Genome Data Viewer NCBIST13 [Mapview hg19]  
OMIM606796   
Gene and transcription
Genbank (Entrez)AF116650 AK130770 AK303530 AK312399 AK316155
RefSeq transcript (Entrez)NM_001278589 NM_003932
Consensus coding sequences : CCDS (NCBI)ST13
Gene ExpressionST13 [ NCBI-GEO ]   ST13 [ EBI - ARRAY_EXPRESS ]   ST13 [ SEEK ]   ST13 [ MEM ]
Gene Expression Viewer (FireBrowse)ST13 [ Firebrowse - Broad ]
GenevisibleExpression of ST13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6767
GTEX Portal (Tissue expression)ST13
Human Protein AtlasENSG00000100380-ST13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50502   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP50502  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP50502
PhosPhoSitePlusP50502
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)Hip_N    STI1    STI1_HS-bd    TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat   
Domain families : Pfam (Sanger)HipN (PF18253)    STI1 (PF17830)   
Domain families : Pfam (NCBI)pfam18253    pfam17830   
Domain families : Smart (EMBL)STI1 (SM00727)  TPR (SM00028)  
Conserved Domain (NCBI)ST13
PDB (RSDB)1UZS   
PDB Europe1UZS   
PDB (PDBSum)1UZS   
PDB (IMB)1UZS   
Structural Biology KnowledgeBase1UZS   
SCOP (Structural Classification of Proteins)1UZS   
CATH (Classification of proteins structures)1UZS   
SuperfamilyP50502
AlphaFold pdb e-kbP50502   
Human Protein Atlas [tissue]ENSG00000100380-ST13 [tissue]
HPRD08426
Protein Interaction databases
DIP (DOE-UCLA)P50502
IntAct (EBI)P50502
BioGRIDST13
STRING (EMBL)ST13
ZODIACST13
Ontologies - Pathways
QuickGOP50502
Ontology : AmiGOprotein binding  cytoplasm  cytosol  protein folding  response to bacterium  protein-macromolecule adaptor activity  heat shock protein binding  protein dimerization activity  chaperone cofactor-dependent protein refolding  protein-containing complex assembly  extracellular exosome  
Ontology : EGO-EBIprotein binding  cytoplasm  cytosol  protein folding  response to bacterium  protein-macromolecule adaptor activity  heat shock protein binding  protein dimerization activity  chaperone cofactor-dependent protein refolding  protein-containing complex assembly  extracellular exosome  
NDEx NetworkST13
Atlas of Cancer Signalling NetworkST13
Wikipedia pathwaysST13
Orthology - Evolution
OrthoDB6767
GeneTree (enSembl)ENSG00000100380
Phylogenetic Trees/Animal Genes : TreeFamST13
Homologs : HomoloGeneST13
Homology/Alignments : Family Browser (UCSC)ST13
Gene fusions - Rearrangements
Fusion : QuiverST13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerST13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ST13
dbVarST13
ClinVarST13
MonarchST13
1000_GenomesST13 
Exome Variant ServerST13
GNOMAD BrowserENSG00000100380
Varsome BrowserST13
ACMGST13 variants
VarityP50502
Genomic Variants (DGV)ST13 [DGVbeta]
DECIPHERST13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisST13 
Mutations
ICGC Data PortalST13 
TCGA Data PortalST13 
Broad Tumor PortalST13
OASIS PortalST13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICST13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DST13
Mutations and Diseases : HGMDST13
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaST13
DgiDB (Drug Gene Interaction Database)ST13
DoCM (Curated mutations)ST13
CIViC (Clinical Interpretations of Variants in Cancer)ST13
Cancer3DST13
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606796   
Orphanet
DisGeNETST13
MedgenST13
Genetic Testing Registry ST13
NextProtP50502 [Medical]
GENETestsST13
Target ValidationST13
Huge Navigator ST13 [HugePedia]
ClinGenST13
Clinical trials, drugs, therapy
MyCancerGenomeST13
Protein Interactions : CTDST13
Pharm GKB GenePA36167
PharosP50502
Clinical trialST13
Miscellaneous
canSAR (ICR)ST13
HarmonizomeST13
ARCHS4ST13
DataMed IndexST13
Probes
Litterature
PubMed100 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXST13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:00:59 CET 2022

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