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ST6GAL1 (ST6 beta-galactosamide alpha-2,6-sialyltranferase 1)

Identity

Other namesSIAT1
ST6GalI
ST6N
HGNC (Hugo) ST6GAL1
LocusID (NCBI) 6480
Location 3q27.3
Location_base_pair Starts at 186739665 and ends at 186796341 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ST6GAL1   10860
Entrez_Gene (NCBI)ST6GAL1  6480  ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
Cards
GeneCards (Weizmann)ST6GAL1
Ensembl (Hinxton)ENSG00000073849 [Gene_View]  chr3:186739665-186796341 [Contig_View]  ST6GAL1 [Vega]
AceView (NCBI)ST6GAL1
Genatlas (Paris)ST6GAL1
SOURCE (Stanford)NM_003032 NM_173216 NM_173217
Genomic and cartography
GoldenPath (UCSC)ST6GAL1  -  3q27.3   chr3:186739665-186796341 +  3q27.3   [Description]    (hg19-Feb_2009)
EnsemblST6GAL1 - 3q27.3 [CytoView]
Mapping of homologs : NCBIST6GAL1 [Mapview]
OMIM109675   
Gene and transcription
Genbank (Entrez)A17362 A23699 AF007133 AK128726 AK292879
RefSeq transcript (SRS)NM_003032 NM_173216 NM_173217
RefSeq transcript (Entrez)NM_003032 NM_173216 NM_173217
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NT_005612 NW_001838884 NW_004078013
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_005612 NW_001838884 NW_004078013
Consensus coding sequences : CCDS (NCBI)ST6GAL1
Cluster EST : UnigeneHs.207459 [ SRS ] Hs.207459 [ NCBI ]
CGAP (NCI)Hs.207459
Alternative Splicing : Fast-db (Paris)GSHG0021404
Alternative Splicing GalleryENSG00000073849
Gene ExpressionST6GAL1 [ NCBI-GEO ]   ST6GAL1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15907 (SRS) P15907 (Uniprot)
NextProtP15907
With graphics : InterProP15907
Splice isoforms : SwissVarP15907(Swissvar)
Domains : Interpro (SRS)Glyco_trans_29    Sialyl_trans   
Domains : Interpro (EBI)Glyco_trans_29    Sialyl_trans   
Related proteins : CluSTrP15907
Domain families : Pfam (SRS)Glyco_transf_29 (PF00777)   
Domain families : Pfam (Sanger)Glyco_transf_29 (PF00777)   
Domain families : Pfam (NCBI)pfam00777   
DMDM6480
Blocks (Seattle)P15907
Human Protein AtlasENSG00000073849
HPRD00184
IPIIPI00013887   IPI00376240   IPI00925201   IPI00924988   IPI00924805   IPI00924563   IPI00927798   IPI00927588   IPI00927347   IPI00927060   IPI00926833   IPI00926637   IPI00926861   IPI00926557   
Protein Interaction databases
DIP (DOE-UCLA)P15907
IntAct (EBI)P15907
FunCoupENSG00000073849
REACTOMEST6GAL1
Protein Interaction Database6480
BioGRIDST6GAL1
InParanoidP15907
Interologous Interaction database P15907
IntegromeDBST6GAL1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ST6GAL1
SNP (GeneSNP Utah)ST6GAL1
SNP : HGBaseST6GAL1
Genetic variants : HAPMAPST6GAL1
Somatic Mutations in Cancer : COSMICST6GAL1 
CONAN: Copy Number AnalysisST6GAL1 
Mutations and Diseases : HGMDST6GAL1
OMIM109675   
GENETests109675   
Disease Genetic AssociationST6GAL1
Huge Navigator ST6GAL1 [HugePedia]  ST6GAL1 [HugeCancerGEM]
Genomic VariantsST6GAL1  ST6GAL1 [DGVbeta]
snp3D : Map Gene to Disease6480
General knowledge
Homologs : HomoloGeneST6GAL1
Homology/Alignments : Family Browser (UCSC)ST6GAL1
Phylogenetic Trees/Animal Genes : TreeFamST6GAL1
Catalytic activity : Enzyme2.4.99.1 [ Enzyme-Expasy ]   2.4.99.1 [ Enzyme-SRS ]   2.4.99.1 [ IntEnz-EBI ]   2.4.99.1 [ BRENDA ]   2.4.99.1 [ KEGG ]   
Chemical/Protein Interactions : CTD6480
Chemical/Pharm GKB GenePA35762
Clinical trialST6GAL1
Cancer Resource (Charite)ENSG00000073849
Ontology : AmiGOGolgi membrane  beta-galactoside alpha-2,6-sialyltransferase activity  extracellular region  cellular protein modification process  humoral immune response  sialyltransferase activity  O-glycan processing  protein N-linked glycosylation via asparagine  integral to Golgi membrane  Golgi cisterna membrane  post-translational protein modification  cellular protein metabolic process  
Ontology : EGO-EBIGolgi membrane  beta-galactoside alpha-2,6-sialyltransferase activity  extracellular region  cellular protein modification process  humoral immune response  sialyltransferase activity  O-glycan processing  protein N-linked glycosylation via asparagine  integral to Golgi membrane  Golgi cisterna membrane  post-translational protein modification  cellular protein metabolic process  
Pathways : KEGGN-Glycan biosynthesisGlycan structures - biosynthesis 1
Other databases
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
PubGeneST6GAL1
iHOPST6GAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:26:50 CEST 2013
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