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STAT6 (signal transducer and activator of transcription 6, interleukin-4 induced)

Identity

Other namesD12S1644
IL-4-STAT
STAT6B
STAT6C
HGNC (Hugo) STAT6
LocusID (NCBI) 6778
Location 12q13.3
Location_base_pair Starts at 57489187 and ends at 57505196 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors ProstateOverviewID5041

External links

Nomenclature
HGNC (Hugo)STAT6   11368
Cards
Entrez_Gene (NCBI)STAT6  6778  signal transducer and activator of transcription 6, interleukin-4 induced
GeneCards (Weizmann)STAT6
Ensembl (Hinxton)ENSG00000166888 [Gene_View]  chr12:57489187-57505196 [Contig_View]  STAT6 [Vega]
ICGC DataPortalENSG00000166888
cBioPortalSTAT6
AceView (NCBI)STAT6
Genatlas (Paris)STAT6
WikiGenes6778
SOURCE (Princeton)NM_001178078 NM_001178079 NM_001178080 NM_001178081 NM_003153
Genomic and cartography
GoldenPath (UCSC)STAT6  -  12q13.3   chr12:57489187-57505196 -  12q13.3   [Description]    (hg19-Feb_2009)
EnsemblSTAT6 - 12q13.3 [CytoView]
Mapping of homologs : NCBISTAT6 [Mapview]
OMIM601512   
Gene and transcription
Genbank (Entrez)AB103088 AB103089 AI082533 AK290431 AK291044
RefSeq transcript (Entrez)NM_001178078 NM_001178079 NM_001178080 NM_001178081 NM_003153
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NG_021272 NT_029419 NW_001838059 NW_004929384
Consensus coding sequences : CCDS (NCBI)STAT6
Cluster EST : UnigeneHs.524518 [ NCBI ]
CGAP (NCI)Hs.524518
Alternative Splicing : Fast-db (Paris)GSHG0007567
Alternative Splicing GalleryENSG00000166888
Gene ExpressionSTAT6 [ NCBI-GEO ]     STAT6 [ SEEK ]   STAT6 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42226 (Uniprot)
NextProtP42226  [Medical]
With graphics : InterProP42226
Splice isoforms : SwissVarP42226 (Swissvar)
Domaine pattern : Prosite (Expaxy)SH2 (PS50001)   
Domains : Interpro (EBI)EF-hand-dom_pair [organisation]   p53-like_TF_DNA-bd [organisation]   SH2 [organisation]   STAT [organisation]   STAT6_C [organisation]   STAT_TF_alpha [organisation]   STAT_TF_coiled-coil [organisation]   STAT_TF_DNA-bd [organisation]   STAT_TF_DNA-bd_sub [organisation]   STAT_TF_prot_interaction [organisation]  
Related proteins : CluSTrP42226
Domain families : Pfam (Sanger)SH2 (PF00017)    STAT6_C (PF14596)    STAT_alpha (PF01017)    STAT_bind (PF02864)    STAT_int (PF02865)   
Domain families : Pfam (NCBI)pfam00017    pfam14596    pfam01017    pfam02864    pfam02865   
Domain families : Smart (EMBL)SH2 (SM00252)  STAT_int (SM00964)  
DMDM Disease mutations6778
Blocks (Seattle)P42226
PDB (SRS)1OJ5   
PDB (PDBSum)1OJ5   
PDB (IMB)1OJ5   
PDB (RSDB)1OJ5   
Human Protein AtlasENSG00000166888 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP42226
HPRD03302
IPIIPI00030782   IPI01012094   IPI01011669   IPI01025306   IPI01025670   IPI01025044   IPI01025337   IPI01025731   IPI01026080   IPI01025551   IPI01025849   IPI01026170   IPI01026273   IPI01024711   IPI01025087   IPI00792907   
Protein Interaction databases
DIP (DOE-UCLA)P42226
IntAct (EBI)P42226
FunCoupENSG00000166888
BioGRIDSTAT6
InParanoidP42226
Interologous Interaction database P42226
IntegromeDBSTAT6
STRING (EMBL)STAT6
Ontologies - Pathways
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  RNA polymerase II core promoter sequence-specific DNA binding  T-helper 1 cell lineage commitment  negative regulation of type 2 immune response  sequence-specific DNA binding transcription factor activity  signal transducer activity  calcium ion binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  signal transduction  protein phosphatase binding  positive regulation of type I interferon production  mammary gland epithelial cell proliferation  interleukin-4-mediated signaling pathway  regulation of cell proliferation  identical protein binding  innate immune response  membrane raft  positive regulation of transcription from RNA polymerase II promoter  positive regulation of isotype switching to IgE isotypes  mammary gland morphogenesis  cellular response to hydrogen peroxide  cellular response to reactive nitrogen species  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  RNA polymerase II core promoter sequence-specific DNA binding  T-helper 1 cell lineage commitment  negative regulation of type 2 immune response  sequence-specific DNA binding transcription factor activity  signal transducer activity  calcium ion binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  signal transduction  protein phosphatase binding  positive regulation of type I interferon production  mammary gland epithelial cell proliferation  interleukin-4-mediated signaling pathway  regulation of cell proliferation  identical protein binding  innate immune response  membrane raft  positive regulation of transcription from RNA polymerase II promoter  positive regulation of isotype switching to IgE isotypes  mammary gland morphogenesis  cellular response to hydrogen peroxide  cellular response to reactive nitrogen species  
Pathways : BIOCARTAIL 4 signaling pathway [Genes]   
Pathways : KEGGJak-STAT signaling pathway    Hepatitis B    Inflammatory bowel disease (IBD)   
Protein Interaction DatabaseSTAT6
Wikipedia pathwaysSTAT6
Gene fusion - rearrangments
Rearrangement : TICdbNAB2 [12q13.3]  -  STAT6 [7p15.2]
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)STAT6
snp3D : Map Gene to Disease6778
SNP (GeneSNP Utah)STAT6
SNP : HGBaseSTAT6
Genetic variants : HAPMAPSTAT6
Exome VariantSTAT6
1000_GenomesSTAT6 
ICGC programENSG00000166888 
Somatic Mutations in Cancer : COSMICSTAT6 
CONAN: Copy Number AnalysisSTAT6 
Mutations and Diseases : HGMDSTAT6
Genomic VariantsSTAT6  STAT6 [DGVbeta]
dbVarSTAT6
ClinVarSTAT6
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM601512   
MedgenSTAT6
GENETestsSTAT6
Disease Genetic AssociationSTAT6
Huge Navigator STAT6 [HugePedia]  STAT6 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSTAT6
Homology/Alignments : Family Browser (UCSC)STAT6
Phylogenetic Trees/Animal Genes : TreeFamSTAT6
Chemical/Protein Interactions : CTD6778
Chemical/Pharm GKB GenePA339
Clinical trialSTAT6
Cancer Resource (Charite)ENSG00000166888
Other databases
Probes
Litterature
PubMed242 Pubmed reference(s) in Entrez
CoreMineSTAT6
iHOPSTAT6
OncoSearchSTAT6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:17:30 CEST 2014
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