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STAT6 (signal transducer and activator of transcription 6, interleukin-4 induced)

Identity

Other namesD12S1644
IL-4-STAT
STAT6B
STAT6C
HGNC (Hugo) STAT6
LocusID (NCBI) 6778
Location 12q13.3
Location_base_pair Starts at 57489187 and ends at 57505196 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)STAT6   11368
Entrez_Gene (NCBI)STAT6  6778  signal transducer and activator of transcription 6, interleukin-4 induced
Cards
GeneCards (Weizmann)STAT6
Ensembl (Hinxton)ENSG00000166888 [Gene_View]  chr12:57489187-57505196 [Contig_View]  STAT6 [Vega]
AceView (NCBI)STAT6
Genatlas (Paris)STAT6
SOURCE (Stanford)NM_001178078 NM_001178079 NM_001178080 NM_001178081 NM_003153
Genomic and cartography
GoldenPath (UCSC)STAT6  -  12q13.3   chr12:57489187-57505196 -  12q13.3   [Description]    (hg19-Feb_2009)
EnsemblSTAT6 - 12q13.3 [CytoView]
Mapping of homologs : NCBISTAT6 [Mapview]
OMIM601512   
Gene and transcription
Genbank (Entrez)AB103088 AB103089 AI082533 AK290431 AK291044
RefSeq transcript (SRS)NM_001178078 NM_001178079 NM_001178080 NM_001178081 NM_003153
RefSeq transcript (Entrez)NM_001178078 NM_001178079 NM_001178080 NM_001178081 NM_003153
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NG_021272 NT_029419 NW_001838059 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NG_021272 NT_029419 NW_001838059 NW_004078075
Consensus coding sequences : CCDS (NCBI)STAT6
Cluster EST : UnigeneHs.524518 [ SRS ] Hs.524518 [ NCBI ]
CGAP (NCI)Hs.524518
Alternative Splicing : Fast-db (Paris)GSHG0007567
Alternative Splicing GalleryENSG00000166888
Gene ExpressionSTAT6 [ NCBI-GEO ]   STAT6 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42226 (SRS) P42226 (Uniprot)
NextProtP42226
With graphics : InterProP42226
Splice isoforms : SwissVarP42226(Swissvar)
Domaine pattern : Prosite (SRS)SH2 (PS50001)   
Domaine pattern : Prosite (Expaxy)SH2 (PS50001)   
Domains : Interpro (SRS)EF-hand-like_dom    p53-like_TF_DNA-bd    SH2    STAT_TF_alpha    STAT_TF_coiled-coil    STAT_TF_core    STAT_TF_DNA-bd    STAT_TF_DNA-bd_sub    STAT_TF_prot_interaction   
Domains : Interpro (EBI)EF-hand-like_dom    p53-like_TF_DNA-bd    SH2    STAT_TF_alpha    STAT_TF_coiled-coil    STAT_TF_core    STAT_TF_DNA-bd    STAT_TF_DNA-bd_sub    STAT_TF_prot_interaction   
Related proteins : CluSTrP42226
Domain families : Pfam (SRS)SH2 (PF00017)    STAT_alpha (PF01017)    STAT_bind (PF02864)    STAT_int (PF02865)   
Domain families : Pfam (Sanger)SH2 (PF00017)    STAT_alpha (PF01017)    STAT_bind (PF02864)    STAT_int (PF02865)   
Domain families : Pfam (NCBI)pfam00017    pfam01017    pfam02864    pfam02865   
Domain families : Smart (EMBL)SH2 (SM00252)  STAT_int (SM00964)  
DMDM6778
Blocks (Seattle)P42226
PDB (SRS)1OJ5   
PDB (PDBSum)1OJ5   
PDB (IMB)1OJ5   
PDB (RSDB)1OJ5   
Human Protein AtlasENSG00000166888
HPRD03302
IPIIPI00030782   IPI01012094   IPI01011669   IPI01025306   IPI01025670   IPI01025044   IPI01025337   IPI01025731   IPI01026080   IPI01025551   IPI01025849   IPI01026170   IPI01026273   IPI01024711   IPI01025087   IPI00792907   
Protein Interaction databases
DIP (DOE-UCLA)P42226
IntAct (EBI)P42226
FunCoupENSG00000166888
REACTOMESTAT6
Protein Interaction Database6778
BioGRIDSTAT6
InParanoidP42226
Interologous Interaction database P42226
IntegromeDBSTAT6
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)STAT6
SNP (GeneSNP Utah)STAT6
SNP : HGBaseSTAT6
Genetic variants : HAPMAPSTAT6
Somatic Mutations in Cancer : COSMICSTAT6 
CONAN: Copy Number AnalysisSTAT6 
Mutations and Diseases : HGMDSTAT6
OMIM601512   
GENETests601512   
Disease Genetic AssociationSTAT6
Huge Navigator STAT6 [HugePedia]  STAT6 [HugeCancerGEM]
Genomic VariantsSTAT6  STAT6 [DGVbeta]
ClinVarSTAT6
snp3D : Map Gene to Disease6778
General knowledge
Homologs : HomoloGeneSTAT6
Homology/Alignments : Family Browser (UCSC)STAT6
Phylogenetic Trees/Animal Genes : TreeFamSTAT6
Chemical/Protein Interactions : CTD6778
Chemical/Pharm GKB GenePA339
Clinical trialSTAT6
Cancer Resource (Charite)ENSG00000166888
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  RNA polymerase II core promoter sequence-specific DNA binding  T-helper 1 cell lineage commitment  negative regulation of type 2 immune response  sequence-specific DNA binding transcription factor activity  signal transducer activity  calcium ion binding  protein binding  nucleus  nucleolus  cytoplasm  cytosol  transcription, DNA-dependent  regulation of transcription from RNA polymerase II promoter  signal transduction  cytokine-mediated signaling pathway  mammary gland epithelial cell proliferation  regulation of cell proliferation  identical protein binding  positive regulation of transcription from RNA polymerase II promoter  positive regulation of isotype switching to IgE isotypes  mammary gland morphogenesis  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  RNA polymerase II core promoter sequence-specific DNA binding  T-helper 1 cell lineage commitment  negative regulation of type 2 immune response  sequence-specific DNA binding transcription factor activity  signal transducer activity  calcium ion binding  protein binding  nucleus  nucleolus  cytoplasm  cytosol  transcription, DNA-dependent  regulation of transcription from RNA polymerase II promoter  signal transduction  cytokine-mediated signaling pathway  mammary gland epithelial cell proliferation  regulation of cell proliferation  identical protein binding  positive regulation of transcription from RNA polymerase II promoter  positive regulation of isotype switching to IgE isotypes  mammary gland morphogenesis  
Pathways : BIOCARTAIL 4 signaling pathway [Genes]   
Pathways : KEGGJak-STAT signaling pathway
Other databases
Probes
Litterature
PubMed218 Pubmed reference(s) in Entrez
PubGeneSTAT6
iHOPSTAT6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:49:06 CEST 2013
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