Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TAF1 (TATA-box binding protein associated factor 1)

Identity

Alias (NCBI)BA2R
CCG1
CCGS
DYT3
DYT3/TAF1
KAT4
MRXS33
N-TAF1
NSCL2
OF
P250
TAF(II)250
TAF2A
TAFII-250
TAFII250
XDP
HGNC (Hugo) TAF1
HGNC Alias symbNSCL2
TAFII250
KAT4
DYT3/TAF1
HGNC Previous nameTAF2A
 BA2R
 CCG1
 CCGS
 DYT3
HGNC Previous nameTATA box binding protein (TBP)-associated factor, RNA polymerase II, A, 250kD
 dystonia 3 (with Parkinsonism)
 TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
LocusID (NCBI) 6872
Atlas_Id 43523
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 71366357 and ends at 71466005 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TAF1 (Xq13.1) / NUP214 (9q34.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TAF1   11535
Cards
Entrez_Gene (NCBI)TAF1    TATA-box binding protein associated factor 1
AliasesBA2R; CCG1; CCGS; DYT3; 
DYT3/TAF1; KAT4; MRXS33; N-TAF1; NSCL2; OF; P250; TAF(II)250; TAF2A; TAFII-250; TAFII250; XDP
GeneCards (Weizmann)TAF1
Ensembl hg19 (Hinxton)ENSG00000147133 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147133 [Gene_View]  ENSG00000147133 [Sequence]  chrX:71366357-71466005 [Contig_View]  TAF1 [Vega]
ICGC DataPortalENSG00000147133
TCGA cBioPortalTAF1
AceView (NCBI)TAF1
Genatlas (Paris)TAF1
SOURCE (Princeton)TAF1
Genetics Home Reference (NIH)TAF1
Genomic and cartography
GoldenPath hg38 (UCSC)TAF1  -     chrX:71366357-71466005 +  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAF1  -     Xq13.1   [Description]    (hg19-Feb_2009)
GoldenPathTAF1 - Xq13.1 [CytoView hg19]  TAF1 - Xq13.1 [CytoView hg38]
ImmunoBaseENSG00000147133
Genome Data Viewer NCBITAF1 [Mapview hg19]  
OMIM300966   313650   314250   
Gene and transcription
Genbank (Entrez)AB209316 AB300418 AJ549245 AJ549246 AJ549247
RefSeq transcript (Entrez)NM_001286074 NM_004606 NM_138923
Consensus coding sequences : CCDS (NCBI)TAF1
Gene ExpressionTAF1 [ NCBI-GEO ]   TAF1 [ EBI - ARRAY_EXPRESS ]   TAF1 [ SEEK ]   TAF1 [ MEM ]
Gene Expression Viewer (FireBrowse)TAF1 [ Firebrowse - Broad ]
GenevisibleExpression of TAF1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6872
GTEX Portal (Tissue expression)TAF1
Human Protein AtlasENSG00000147133-TAF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TAF1
Human Protein Atlas [tissue]ENSG00000147133-TAF1 [tissue]
HPRD02436
Protein Interaction databases
BioGRIDTAF1
STRING (EMBL)TAF1
ZODIACTAF1
Ontologies - Pathways
Litterature
PubMed206 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTAF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:34:09 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.