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TMF1 (TATA element modulatory factor 1)

Identity

Alias_symbol (synonym)ARA160
TMF
Other alias
HGNC (Hugo) TMF1
LocusID (NCBI) 7110
Atlas_Id 42590
Location 3p14.1  [Link to chromosome band 3p14]
Location_base_pair Starts at 69068978 and ends at 69101484 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMF1 (3p14.1) / EOGT (3p14.1)TMF1 (3p14.1) / TMF1 (3p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMF1   11870
Cards
Entrez_Gene (NCBI)TMF1  7110  TATA element modulatory factor 1
AliasesARA160; TMF
GeneCards (Weizmann)TMF1
Ensembl hg19 (Hinxton)ENSG00000144747 [Gene_View]  chr3:69068978-69101484 [Contig_View]  TMF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000144747 [Gene_View]  chr3:69068978-69101484 [Contig_View]  TMF1 [Vega]
ICGC DataPortalENSG00000144747
TCGA cBioPortalTMF1
AceView (NCBI)TMF1
Genatlas (Paris)TMF1
WikiGenes7110
SOURCE (Princeton)TMF1
Genetics Home Reference (NIH)TMF1
Genomic and cartography
GoldenPath hg19 (UCSC)TMF1  -     chr3:69068978-69101484 -  3p14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMF1  -     3p14.1   [Description]    (hg38-Dec_2013)
EnsemblTMF1 - 3p14.1 [CytoView hg19]  TMF1 - 3p14.1 [CytoView hg38]
Mapping of homologs : NCBITMF1 [Mapview hg19]  TMF1 [Mapview hg38]
OMIM601126   
Gene and transcription
Genbank (Entrez)AB209109 AK021741 AK096365 AK299020 AK312697
RefSeq transcript (Entrez)NM_007114
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929310
Consensus coding sequences : CCDS (NCBI)TMF1
Cluster EST : UnigeneHs.267632 [ NCBI ]
CGAP (NCI)Hs.267632
Alternative Splicing GalleryENSG00000144747
Gene ExpressionTMF1 [ NCBI-GEO ]   TMF1 [ EBI - ARRAY_EXPRESS ]   TMF1 [ SEEK ]   TMF1 [ MEM ]
Gene Expression Viewer (FireBrowse)TMF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7110
GTEX Portal (Tissue expression)TMF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82094   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP82094  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82094
Splice isoforms : SwissVarP82094
PhosPhoSitePlusP82094
Domains : Interpro (EBI)TMF_DNA-bd    TMF_TATA-bd   
Domain families : Pfam (Sanger)TMF_DNA_bd (PF12329)    TMF_TATA_bd (PF12325)   
Domain families : Pfam (NCBI)pfam12329    pfam12325   
Conserved Domain (NCBI)TMF1
DMDM Disease mutations7110
Blocks (Seattle)TMF1
SuperfamilyP82094
Human Protein AtlasENSG00000144747
Peptide AtlasP82094
HPRD03081
IPIIPI00930399   IPI00010586   IPI00871307   IPI00947525   
Protein Interaction databases
DIP (DOE-UCLA)P82094
IntAct (EBI)P82094
FunCoupENSG00000144747
BioGRIDTMF1
STRING (EMBL)TMF1
ZODIACTMF1
Ontologies - Pathways
QuickGOP82094
Ontology : AmiGOGolgi membrane  acrosome assembly  positive regulation of cytokine production  DNA binding  transcription cofactor activity  protein binding  nucleus  endoplasmic reticulum  Golgi apparatus  cytosol  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  spermatid nucleus differentiation  negative regulation of gene expression  sperm motility  luteinizing hormone secretion  Leydig cell differentiation  defense response to bacterium  negative regulation of apoptotic process  regulation of proteasomal protein catabolic process  cellular response to organic cyclic compound  positive regulation of testosterone secretion  
Ontology : EGO-EBIGolgi membrane  acrosome assembly  positive regulation of cytokine production  DNA binding  transcription cofactor activity  protein binding  nucleus  endoplasmic reticulum  Golgi apparatus  cytosol  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  spermatid nucleus differentiation  negative regulation of gene expression  sperm motility  luteinizing hormone secretion  Leydig cell differentiation  defense response to bacterium  negative regulation of apoptotic process  regulation of proteasomal protein catabolic process  cellular response to organic cyclic compound  positive regulation of testosterone secretion  
NDEx NetworkTMF1
Atlas of Cancer Signalling NetworkTMF1
Wikipedia pathwaysTMF1
Orthology - Evolution
OrthoDB7110
GeneTree (enSembl)ENSG00000144747
Phylogenetic Trees/Animal Genes : TreeFamTMF1
HOVERGENP82094
HOGENOMP82094
Homologs : HomoloGeneTMF1
Homology/Alignments : Family Browser (UCSC)TMF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMF1
dbVarTMF1
ClinVarTMF1
1000_GenomesTMF1 
Exome Variant ServerTMF1
ExAC (Exome Aggregation Consortium)TMF1 (select the gene name)
Genetic variants : HAPMAP7110
Genomic Variants (DGV)TMF1 [DGVbeta]
DECIPHER (Syndromes)3:69068978-69101484  ENSG00000144747
CONAN: Copy Number AnalysisTMF1 
Mutations
ICGC Data PortalTMF1 
TCGA Data PortalTMF1 
Broad Tumor PortalTMF1
OASIS PortalTMF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMF1
DgiDB (Drug Gene Interaction Database)TMF1
DoCM (Curated mutations)TMF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMF1 (select a term)
intoGenTMF1
Cancer3DTMF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601126   
Orphanet
MedgenTMF1
Genetic Testing Registry TMF1
NextProtP82094 [Medical]
TSGene7110
GENETestsTMF1
Huge Navigator TMF1 [HugePedia]
snp3D : Map Gene to Disease7110
BioCentury BCIQTMF1
ClinGenTMF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7110
Chemical/Pharm GKB GenePA36571
Clinical trialTMF1
Miscellaneous
canSAR (ICR)TMF1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMF1
EVEXTMF1
GoPubMedTMF1
iHOPTMF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:31:32 CET 2017

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