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TNFRSF10D (tumor necrosis factor receptor superfamily member 10d)

Identity

Other namesCD264
DCR2
TRAIL-R4
TRAILR4
TRUNDD
HGNC (Hugo) TNFRSF10D
LocusID (NCBI) 8793
Atlas_Id 42608
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 22993101 and ends at 23021543 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TNFRSF10D   11907
Cards
Entrez_Gene (NCBI)TNFRSF10D  8793  tumor necrosis factor receptor superfamily member 10d
AliasesCD264; DCR2; TRAIL-R4; TRAILR4; 
TRUNDD
GeneCards (Weizmann)TNFRSF10D
Ensembl hg19 (Hinxton)ENSG00000173530 [Gene_View]  chr8:22993101-23021543 [Contig_View]  TNFRSF10D [Vega]
Ensembl hg38 (Hinxton)ENSG00000173530 [Gene_View]  chr8:22993101-23021543 [Contig_View]  TNFRSF10D [Vega]
ICGC DataPortalENSG00000173530
TCGA cBioPortalTNFRSF10D
AceView (NCBI)TNFRSF10D
Genatlas (Paris)TNFRSF10D
WikiGenes8793
SOURCE (Princeton)TNFRSF10D
Genomic and cartography
GoldenPath hg19 (UCSC)TNFRSF10D  -     chr8:22993101-23021543 -  8p21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TNFRSF10D  -     8p21.3   [Description]    (hg38-Dec_2013)
EnsemblTNFRSF10D - 8p21.3 [CytoView hg19]  TNFRSF10D - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBITNFRSF10D [Mapview hg19]  TNFRSF10D [Mapview hg38]
OMIM603614   
Gene and transcription
Genbank (Entrez)AA743393 AF021232 AF021233 AF023849 AF029761
RefSeq transcript (Entrez)NM_003840
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_032579 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)TNFRSF10D
Cluster EST : UnigeneHs.213467 [ NCBI ]
CGAP (NCI)Hs.213467
Alternative Splicing GalleryENSG00000173530
Gene ExpressionTNFRSF10D [ NCBI-GEO ]   TNFRSF10D [ EBI - ARRAY_EXPRESS ]   TNFRSF10D [ SEEK ]   TNFRSF10D [ MEM ]
Gene Expression Viewer (FireBrowse)TNFRSF10D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8793
GTEX Portal (Tissue expression)TNFRSF10D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBN6 (Uniprot)
NextProtQ9UBN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBN6
Splice isoforms : SwissVarQ9UBN6 (Swissvar)
PhosPhoSitePlusQ9UBN6
Domaine pattern : Prosite (Expaxy)TNFR_NGFR_1 (PS00652)    TNFR_NGFR_2 (PS50050)   
Domains : Interpro (EBI)TNFR/NGFR_Cys_rich_reg    TNFR_10   
Domain families : Pfam (Sanger)TNFR_c6 (PF00020)   
Domain families : Pfam (NCBI)pfam00020   
Domain families : Smart (EMBL)TNFR (SM00208)  
DMDM Disease mutations8793
Blocks (Seattle)TNFRSF10D
SuperfamilyQ9UBN6
Human Protein AtlasENSG00000173530
Peptide AtlasQ9UBN6
HPRD04682
IPIIPI00294516   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBN6
IntAct (EBI)Q9UBN6
FunCoupENSG00000173530
BioGRIDTNFRSF10D
STRING (EMBL)TNFRSF10D
ZODIACTNFRSF10D
Ontologies - Pathways
QuickGOQ9UBN6
Ontology : AmiGOtransmembrane signaling receptor activity  tumor necrosis factor-activated receptor activity  plasma membrane  integral component of plasma membrane  inflammatory response  immune response  signal transduction  multicellular organism development  extrinsic apoptotic signaling pathway via death domain receptors  response to lipopolysaccharide  tumor necrosis factor-mediated signaling pathway  regulation of cell proliferation  regulation of apoptotic process  negative regulation of apoptotic process  TRAIL binding  
Ontology : EGO-EBItransmembrane signaling receptor activity  tumor necrosis factor-activated receptor activity  plasma membrane  integral component of plasma membrane  inflammatory response  immune response  signal transduction  multicellular organism development  extrinsic apoptotic signaling pathway via death domain receptors  response to lipopolysaccharide  tumor necrosis factor-mediated signaling pathway  regulation of cell proliferation  regulation of apoptotic process  negative regulation of apoptotic process  TRAIL binding  
Pathways : KEGGCytokine-cytokine receptor interaction    Apoptosis    Natural killer cell mediated cytotoxicity    Measles    Influenza A   
NDEx Network
Atlas of Cancer Signalling NetworkTNFRSF10D
Wikipedia pathwaysTNFRSF10D
Orthology - Evolution
OrthoDB8793
GeneTree (enSembl)ENSG00000173530
Phylogenetic Trees/Animal Genes : TreeFamTNFRSF10D
Homologs : HomoloGeneTNFRSF10D
Homology/Alignments : Family Browser (UCSC)TNFRSF10D
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTNFRSF10D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNFRSF10D
dbVarTNFRSF10D
ClinVarTNFRSF10D
1000_GenomesTNFRSF10D 
Exome Variant ServerTNFRSF10D
ExAC (Exome Aggregation Consortium)TNFRSF10D (select the gene name)
Genetic variants : HAPMAP8793
Genomic Variants (DGV)TNFRSF10D [DGVbeta]
Mutations
ICGC Data PortalTNFRSF10D 
TCGA Data PortalTNFRSF10D 
Broad Tumor PortalTNFRSF10D
OASIS PortalTNFRSF10D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNFRSF10D 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Death Receptor Database (DRdb)
BioMutasearch TNFRSF10D
DgiDB (Drug Gene Interaction Database)TNFRSF10D
DoCM (Curated mutations)TNFRSF10D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNFRSF10D (select a term)
intoGenTNFRSF10D
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)8:22993101-23021543  ENSG00000173530
CONAN: Copy Number AnalysisTNFRSF10D 
Mutations and Diseases : HGMDTNFRSF10D
OMIM603614   
MedgenTNFRSF10D
Genetic Testing Registry TNFRSF10D
NextProtQ9UBN6 [Medical]
TSGene8793
GENETestsTNFRSF10D
Huge Navigator TNFRSF10D [HugePedia]
snp3D : Map Gene to Disease8793
BioCentury BCIQTNFRSF10D
ClinGenTNFRSF10D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8793
Chemical/Pharm GKB GenePA36600
Clinical trialTNFRSF10D
Miscellaneous
canSAR (ICR)TNFRSF10D (select the gene name)
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNFRSF10D
EVEXTNFRSF10D
GoPubMedTNFRSF10D
iHOPTNFRSF10D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 9 19:12:59 CEST 2016

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