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TNIP3 (TNFAIP3 interacting protein 3)

Identity

Alias_symbol (synonym)LIND
FLJ21162
ABIN-3
Other alias
HGNC (Hugo) TNIP3
LocusID (NCBI) 79931
Atlas_Id 51200
Location 4q27  [Link to chromosome band 4q27]
Location_base_pair Starts at 121131409 and ends at 121216627 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TNIP3   19315
Cards
Entrez_Gene (NCBI)TNIP3  79931  TNFAIP3 interacting protein 3
AliasesABIN-3; LIND
GeneCards (Weizmann)TNIP3
Ensembl hg19 (Hinxton)ENSG00000050730 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000050730 [Gene_View]  chr4:121131409-121216627 [Contig_View]  TNIP3 [Vega]
ICGC DataPortalENSG00000050730
TCGA cBioPortalTNIP3
AceView (NCBI)TNIP3
Genatlas (Paris)TNIP3
WikiGenes79931
SOURCE (Princeton)TNIP3
Genetics Home Reference (NIH)TNIP3
Genomic and cartography
GoldenPath hg38 (UCSC)TNIP3  -     chr4:121131409-121216627 -  4q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNIP3  -     4q27   [Description]    (hg19-Feb_2009)
EnsemblTNIP3 - 4q27 [CytoView hg19]  TNIP3 - 4q27 [CytoView hg38]
Mapping of homologs : NCBITNIP3 [Mapview hg19]  TNIP3 [Mapview hg38]
OMIM608019   
Gene and transcription
Genbank (Entrez)AF277289 AJ320534 AK024815 AK290409 AK301058
RefSeq transcript (Entrez)NM_001128843 NM_001244764 NM_024873
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNIP3
Cluster EST : UnigeneHs.208206 [ NCBI ]
CGAP (NCI)Hs.208206
Alternative Splicing GalleryENSG00000050730
Gene ExpressionTNIP3 [ NCBI-GEO ]   TNIP3 [ EBI - ARRAY_EXPRESS ]   TNIP3 [ SEEK ]   TNIP3 [ MEM ]
Gene Expression Viewer (FireBrowse)TNIP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79931
GTEX Portal (Tissue expression)TNIP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KP6
Splice isoforms : SwissVarQ96KP6
PhosPhoSitePlusQ96KP6
Domains : Interpro (EBI)CC2-LZ_dom    TNIP3   
Domain families : Pfam (Sanger)CC2-LZ (PF16516)   
Domain families : Pfam (NCBI)pfam16516   
Conserved Domain (NCBI)TNIP3
DMDM Disease mutations79931
Blocks (Seattle)TNIP3
SuperfamilyQ96KP6
Human Protein AtlasENSG00000050730
Peptide AtlasQ96KP6
HPRD16268
IPIIPI00386936   IPI00964265   IPI00964014   IPI00965745   
Protein Interaction databases
DIP (DOE-UCLA)Q96KP6
IntAct (EBI)Q96KP6
FunCoupENSG00000050730
BioGRIDTNIP3
STRING (EMBL)TNIP3
ZODIACTNIP3
Ontologies - Pathways
QuickGOQ96KP6
Ontology : AmiGOMyD88-independent toll-like receptor signaling pathway  protein binding  cytosol  inflammatory response  protein deubiquitination  polyubiquitin binding  toll-like receptor 4 signaling pathway  negative regulation of I-kappaB kinase/NF-kappaB signaling  cellular response to lipopolysaccharide  
Ontology : EGO-EBIMyD88-independent toll-like receptor signaling pathway  protein binding  cytosol  inflammatory response  protein deubiquitination  polyubiquitin binding  toll-like receptor 4 signaling pathway  negative regulation of I-kappaB kinase/NF-kappaB signaling  cellular response to lipopolysaccharide  
NDEx NetworkTNIP3
Atlas of Cancer Signalling NetworkTNIP3
Wikipedia pathwaysTNIP3
Orthology - Evolution
OrthoDB79931
GeneTree (enSembl)ENSG00000050730
Phylogenetic Trees/Animal Genes : TreeFamTNIP3
HOVERGENQ96KP6
HOGENOMQ96KP6
Homologs : HomoloGeneTNIP3
Homology/Alignments : Family Browser (UCSC)TNIP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNIP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNIP3
dbVarTNIP3
ClinVarTNIP3
1000_GenomesTNIP3 
Exome Variant ServerTNIP3
ExAC (Exome Aggregation Consortium)TNIP3 (select the gene name)
Genetic variants : HAPMAP79931
Genomic Variants (DGV)TNIP3 [DGVbeta]
DECIPHERTNIP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNIP3 
Mutations
ICGC Data PortalTNIP3 
TCGA Data PortalTNIP3 
Broad Tumor PortalTNIP3
OASIS PortalTNIP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNIP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTNIP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TNIP3
DgiDB (Drug Gene Interaction Database)TNIP3
DoCM (Curated mutations)TNIP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNIP3 (select a term)
intoGenTNIP3
Cancer3DTNIP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608019   
Orphanet
MedgenTNIP3
Genetic Testing Registry TNIP3
NextProtQ96KP6 [Medical]
TSGene79931
GENETestsTNIP3
Huge Navigator TNIP3 [HugePedia]
snp3D : Map Gene to Disease79931
BioCentury BCIQTNIP3
ClinGenTNIP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79931
Chemical/Pharm GKB GenePA134934429
Clinical trialTNIP3
Miscellaneous
canSAR (ICR)TNIP3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNIP3
EVEXTNIP3
GoPubMedTNIP3
iHOPTNIP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:41:40 CEST 2017

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