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TNRC6A (trinucleotide repeat containing adaptor 6A)

Identity

Alias (NCBI)CAGH26
FAME6
GW1
GW182
TNRC6
HGNC (Hugo) TNRC6A
HGNC Alias symbCAGH26
KIAA1460
GW182
HGNC Previous nameTNRC6
HGNC Previous nametrinucleotide repeat containing 6
 trinucleotide repeat containing 6A
LocusID (NCBI) 27327
Atlas_Id 50817
Location 16p12.1  [Link to chromosome band 16p12]
Location_base_pair Starts at 24729651 and ends at 24826216 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNF112 (17p11.2) / TNRC6A (16p12.1)SETX (9q34.13) / TNRC6A (16p12.1)SLC9A9 (3q24) / TNRC6A (16p12.1)
SMG6 (17p13.3) / TNRC6A (16p12.1)SORBS2 (4q35.1) / TNRC6A (16p12.1)STRN4 (19q13.32) / TNRC6A (16p12.1)
TG (8q24.22) / TNRC6A (16p12.1)TNRC6A (16p12.1) / PRKCB (16p12.2)TNRC6A (16p12.1) / RPA1 (17p13.3)
TNRC6A (16p12.1) / TNRC6A (16p12.1)WDFY4 (10q11.22) / TNRC6A (16p12.1)ZNF814 (19q13.43) / TNRC6A (16p12.1)
TNRC6A 16p12.1 / PRKCB 16p12.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TNRC6A   11969
Cards
Entrez_Gene (NCBI)TNRC6A    trinucleotide repeat containing adaptor 6A
AliasesCAGH26; FAME6; GW1; GW182; 
TNRC6
GeneCards (Weizmann)TNRC6A
Ensembl hg19 (Hinxton)ENSG00000090905 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000090905 [Gene_View]  ENSG00000090905 [Sequence]  chr16:24729651-24826216 [Contig_View]  TNRC6A [Vega]
ICGC DataPortalENSG00000090905
TCGA cBioPortalTNRC6A
AceView (NCBI)TNRC6A
Genatlas (Paris)TNRC6A
SOURCE (Princeton)TNRC6A
Genetics Home Reference (NIH)TNRC6A
Genomic and cartography
GoldenPath hg38 (UCSC)TNRC6A  -     chr16:24729651-24826216 +  16p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNRC6A  -     16p12.1   [Description]    (hg19-Feb_2009)
GoldenPathTNRC6A - 16p12.1 [CytoView hg19]  TNRC6A - 16p12.1 [CytoView hg38]
ImmunoBaseENSG00000090905
Genome Data Viewer NCBITNRC6A [Mapview hg19]  
OMIM610739   618074   
Gene and transcription
Genbank (Entrez)AB040893 AJ492221 AK001773 AK025277 AK025696
RefSeq transcript (Entrez)NM_001330520 NM_001351850 NM_014494
Consensus coding sequences : CCDS (NCBI)TNRC6A
Gene ExpressionTNRC6A [ NCBI-GEO ]   TNRC6A [ EBI - ARRAY_EXPRESS ]   TNRC6A [ SEEK ]   TNRC6A [ MEM ]
Gene Expression Viewer (FireBrowse)TNRC6A [ Firebrowse - Broad ]
GenevisibleExpression of TNRC6A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27327
GTEX Portal (Tissue expression)TNRC6A
Human Protein AtlasENSG00000090905-TNRC6A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TNRC6A
Human Protein Atlas [tissue]ENSG00000090905-TNRC6A [tissue]
HPRD11640
Protein Interaction databases
BioGRIDTNRC6A
STRING (EMBL)TNRC6A
ZODIACTNRC6A
Ontologies - Pathways
Litterature
PubMed105 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNRC6A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:51 CEST 2021

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