Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM5 (tripartite motif containing 5)

Identity

Alias (NCBI)RNF88
TRIM5alpha
HGNC (Hugo) TRIM5
HGNC Alias symbRNF88
TRIM5alpha
HGNC Alias nametripartite motif protein TRIM5
 tripartite motif protein TRIM
HGNC Previous nametripartite motif-containing 5
LocusID (NCBI) 85363
Atlas_Id 43965
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5663195 and ends at 5685074 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LAMC1 (1q25.3) / TRIM5 (11p15.4)MARVELD2 (5q13.2) / TRIM5 (11p15.4)SCRG1 (4q34.1) / TRIM5 (11p15.4)
TRIM5 (11p15.4) / CDC27 (17q21.32)TRIM5 (11p15.4) / MFAP1 (15q15.3)TRIM5 (11p15.4) / YY1AP1 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRIM5   16276
Cards
Entrez_Gene (NCBI)TRIM5    tripartite motif containing 5
AliasesRNF88; TRIM5alpha
GeneCards (Weizmann)TRIM5
Ensembl hg19 (Hinxton)ENSG00000132256 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132256 [Gene_View]  ENSG00000132256 [Sequence]  chr11:5663195-5685074 [Contig_View]  TRIM5 [Vega]
ICGC DataPortalENSG00000132256
TCGA cBioPortalTRIM5
AceView (NCBI)TRIM5
Genatlas (Paris)TRIM5
SOURCE (Princeton)TRIM5
Genetics Home Reference (NIH)TRIM5
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM5  -     chr11:5663195-5685074 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM5  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathTRIM5 - 11p15.4 [CytoView hg19]  TRIM5 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000132256
Genome Data Viewer NCBITRIM5 [Mapview hg19]  
OMIM608487   
Gene and transcription
Genbank (Entrez)AB362928 AF220025 AF220026 AF220027 AF220028
RefSeq transcript (Entrez)NM_033034 NM_033092 NM_033093
Consensus coding sequences : CCDS (NCBI)TRIM5
Gene ExpressionTRIM5 [ NCBI-GEO ]   TRIM5 [ EBI - ARRAY_EXPRESS ]   TRIM5 [ SEEK ]   TRIM5 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM5 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85363
GTEX Portal (Tissue expression)TRIM5
Human Protein AtlasENSG00000132256-TRIM5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRIM5
Human Protein Atlas [tissue]ENSG00000132256-TRIM5 [tissue]
HPRD07004
Protein Interaction databases
BioGRIDTRIM5
STRING (EMBL)TRIM5
ZODIACTRIM5
Ontologies - Pathways
Litterature
PubMed230 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:36:22 CEST 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.