Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TRIP6 (thyroid hormone receptor interactor 6)

Identity

Alias_symbol (synonym)ZRP-1
OIP1
MGC10556
MGC10558
MGC29959
MGC3837
MGC4423
Other aliasOIP-1
TRIP-6
TRIP6i2
HGNC (Hugo) TRIP6
LocusID (NCBI) 7205
Atlas_Id 42706
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100867328 and ends at 100873454 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPAIN (17p13.2) / TRIP6 (7q22.1)SRRT (7q22.1) / TRIP6 (7q22.1)TRIP6 (7q22.1) / RPL13A (19q13.33)
TRIP6 (7q22.1) / TRIP6 (7q22.1)SRRT 7q22.1 / TRIP6 7q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIP6   12311
Cards
Entrez_Gene (NCBI)TRIP6  7205  thyroid hormone receptor interactor 6
AliasesOIP-1; OIP1; TRIP-6; TRIP6i2; 
ZRP-1
GeneCards (Weizmann)TRIP6
Ensembl hg19 (Hinxton)ENSG00000087077 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000087077 [Gene_View]  chr7:100867328-100873454 [Contig_View]  TRIP6 [Vega]
ICGC DataPortalENSG00000087077
TCGA cBioPortalTRIP6
AceView (NCBI)TRIP6
Genatlas (Paris)TRIP6
WikiGenes7205
SOURCE (Princeton)TRIP6
Genetics Home Reference (NIH)TRIP6
Genomic and cartography
GoldenPath hg38 (UCSC)TRIP6  -     chr7:100867328-100873454 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIP6  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblTRIP6 - 7q22.1 [CytoView hg19]  TRIP6 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBITRIP6 [Mapview hg19]  TRIP6 [Mapview hg38]
OMIM602933   
Gene and transcription
Genbank (Entrez)AB628085 AB628086 AB628087 AB628088 AF000974
RefSeq transcript (Entrez)NM_003302
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIP6
Cluster EST : UnigeneHs.534360 [ NCBI ]
CGAP (NCI)Hs.534360
Alternative Splicing GalleryENSG00000087077
Gene ExpressionTRIP6 [ NCBI-GEO ]   TRIP6 [ EBI - ARRAY_EXPRESS ]   TRIP6 [ SEEK ]   TRIP6 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7205
GTEX Portal (Tissue expression)TRIP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15654   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15654  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15654
Splice isoforms : SwissVarQ15654
PhosPhoSitePlusQ15654
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)TRIP6
DMDM Disease mutations7205
Blocks (Seattle)TRIP6
PDB (SRS)1X61    2DLO   
PDB (PDBSum)1X61    2DLO   
PDB (IMB)1X61    2DLO   
PDB (RSDB)1X61    2DLO   
Structural Biology KnowledgeBase1X61    2DLO   
SCOP (Structural Classification of Proteins)1X61    2DLO   
CATH (Classification of proteins structures)1X61    2DLO   
SuperfamilyQ15654
Human Protein AtlasENSG00000087077
Peptide AtlasQ15654
HPRD04242
IPIIPI00301561   IPI00470870   IPI00927590   IPI00927116   IPI00926749   
Protein Interaction databases
DIP (DOE-UCLA)Q15654
IntAct (EBI)Q15654
FunCoupENSG00000087077
BioGRIDTRIP6
STRING (EMBL)TRIP6
ZODIACTRIP6
Ontologies - Pathways
QuickGOQ15654
Ontology : AmiGORNA binding  interleukin-1 receptor binding  protein binding  nucleus  cytosol  cytoskeleton  plasma membrane  focal adhesion  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  release of cytoplasmic sequestered NF-kappaB  kinase binding  positive regulation of cell migration  interleukin-1 receptor complex  thyroid hormone receptor binding  focal adhesion assembly  
Ontology : EGO-EBIRNA binding  interleukin-1 receptor binding  protein binding  nucleus  cytosol  cytoskeleton  plasma membrane  focal adhesion  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  release of cytoplasmic sequestered NF-kappaB  kinase binding  positive regulation of cell migration  interleukin-1 receptor complex  thyroid hormone receptor binding  focal adhesion assembly  
Pathways : KEGGNOD-like receptor signaling pathway   
NDEx NetworkTRIP6
Atlas of Cancer Signalling NetworkTRIP6
Wikipedia pathwaysTRIP6
Orthology - Evolution
OrthoDB7205
GeneTree (enSembl)ENSG00000087077
Phylogenetic Trees/Animal Genes : TreeFamTRIP6
HOVERGENQ15654
HOGENOMQ15654
Homologs : HomoloGeneTRIP6
Homology/Alignments : Family Browser (UCSC)TRIP6
Gene fusions - Rearrangements
Fusion : MitelmanSRRT/TRIP6 [7q22.1/7q22.1]  [t(7;7)(q22;q22)]  
Fusion: TCGASRRT 7q22.1 TRIP6 7q22.1 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIP6
dbVarTRIP6
ClinVarTRIP6
1000_GenomesTRIP6 
Exome Variant ServerTRIP6
ExAC (Exome Aggregation Consortium)TRIP6 (select the gene name)
Genetic variants : HAPMAP7205
Genomic Variants (DGV)TRIP6 [DGVbeta]
DECIPHERTRIP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIP6 
Mutations
ICGC Data PortalTRIP6 
TCGA Data PortalTRIP6 
Broad Tumor PortalTRIP6
OASIS PortalTRIP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIP6
DgiDB (Drug Gene Interaction Database)TRIP6
DoCM (Curated mutations)TRIP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIP6 (select a term)
intoGenTRIP6
Cancer3DTRIP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602933   
Orphanet
MedgenTRIP6
Genetic Testing Registry TRIP6
NextProtQ15654 [Medical]
TSGene7205
GENETestsTRIP6
Target ValidationTRIP6
Huge Navigator TRIP6 [HugePedia]
snp3D : Map Gene to Disease7205
BioCentury BCIQTRIP6
ClinGenTRIP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7205
Chemical/Pharm GKB GenePA36989
Clinical trialTRIP6
Miscellaneous
canSAR (ICR)TRIP6 (select the gene name)
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIP6
EVEXTRIP6
GoPubMedTRIP6
iHOPTRIP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:00:57 CEST 2017

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